SRR1526875_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526875_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25059
Sequences flagged as poor quality	0
Sequence length	56
%GC	58

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GGCTGCGGGGAAGTCTTTCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTG	135	0.5387286005028133	No Hit
GGCTGCGGGATTTTTCTTTATTGCCAATCTTTGAAGTCATTCAACCCAGGACTGAA	98	0.39107705814278304	No Hit
GGCTGCGGGATTCAAGCCACTACACATGTTGGCTGATGTTCCTTTTAATTCCTGTG	93	0.3711241470130492	No Hit
GGCTGCGGGATCCACACATTGTCCCACACACCCCTGGTTAGCCATCTCAATACCTA	92	0.36713356478710246	No Hit
GGCTGCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	85	0.3391994892054751	No Hit
GGCTGCGGGAACCATACCTGGCTTTGCCCTTGGTCTCTCTTAGGCGGACTCAGTTC	83	0.33121832475358154	No Hit
GGCTGCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	79	0.31525599584979447	No Hit
GGCTGCGGGATTCCATTCCCTGCCCTCCCATACACCCTCTGTCTGTTCCACATCCC	67	0.2673690091384333	No Hit
GGCTGCGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGAC	67	0.2673690091384333	No Hit
GGCTGCGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	67	0.2673690091384333	No Hit
GGCTGCGGGAGGTCTACCTGGTAGATTTTCTTTAAATGGGGGACACCTGTAATGGG	65	0.25938784468653975	No Hit
GGCTGCGGCAGTGCAGGATTGCAAATGGTTTAATGTAATCAAGAAATTCAAGCTGA	60	0.23943493355680595	No Hit
GGCTGCGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT	57	0.22746318687896566	No Hit
GGCTGCGGGTGAGAAAAAGCTAAGTTTTGTCATAGGTTGATCTTCACTAATTTGCT	52	0.2075102757492318	No Hit
GGCTGCGGGGTGCTGGCTGCGGGGTGCCTGTACCAGAGTTTGCGGACAGCGATCCT	52	0.2075102757492318	No Hit
GGCTGCGGGAGGAGGAGTACATCAAGCGCGCCCTGGCCAACAGCCTCGCTTGTCAA	50	0.1995291112973383	No Hit
GGCTGCGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCT	50	0.1995291112973383	No Hit
GGCTGCGGGATCGCAGAGATGGTTCGGCACGCCCTGGATGCCCACCAGAGGTCCAT	50	0.1995291112973383	No Hit
GGCTGCGGGATAACTGGGGGCCGGTTAGCAAGAGCCTCCAGACAGTGCTAGGCAGT	49	0.19553852907139152	No Hit
GGCTGCGGGATGCTTTGCCCTCCTTTGTAATTTGTAAAAGTCACATTCTTGACTTT	47	0.18755736461949798	No Hit
GGCTGCGGGCACCCACTCCCCCTAAAAAAATTATTTATTTATTATATCTAAGTACA	45	0.17957620016760445	No Hit
GGCTGCGGGGGAAAGTCATTCTGAATGAGAAGTAAATTATTTTGTGTAATACATCC	44	0.1755856179416577	No Hit
GGCTGCGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCT	41	0.16361387126381738	No Hit
GGCTGCGGGCAATCTTGATCTGAAACAATACGCATTGCAGTTCCTCAGCCTAAGAA	40	0.15962328903787062	No Hit
GGCTGCGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40	0.15962328903787062	No Hit
GGCTGCGGGAACATTTATCTATCTACTTTCCTCTCATGATTTTTTTTAAATTTTAT	38	0.1516421245859771	No Hit
GGCTGCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTC	38	0.1516421245859771	No Hit
GGCTGCGGGAGCTTTGGCCACCAAGCCAGGCATCAATTGCCCTCCCCTCTGCCCTG	36	0.14366096013408355	No Hit
GGCTGCGGAGACAAATTTTACTTCCCACAATCCTCCTGCATCCAGTCTATAAAAAT	36	0.14366096013408355	No Hit
GGCTGCGGGGTGGTTGAGCCCTACAATTCCATCCTCACCACCCACACCACCCTGGA	33	0.13168921345624326	No Hit
GGCTGCGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	33	0.13168921345624326	No Hit
GGCTGCGGGATCCGGACCCAGTCTTCTCTCTATTGCTCCCTCCCCGGGGGTCACCG	33	0.13168921345624326	No Hit
GGCTGCGGGACTCTAGATGTTAAAGAGGTTGCCAGTGTATGACAAAGTAGAGTTAG	33	0.13168921345624326	No Hit
GGCTGCGGGGAGATGCTTTAGCTCTGCAGTGGAGTCCCGCTGTATCTGACCATCCG	32	0.1276986312302965	No Hit
GGCTGCGGGACCACAGCCACGTTTCAGACCTTCTCCCCCGATACCTTCACAGTCAT	32	0.1276986312302965	No Hit
GGCTGCGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCTG	31	0.12370804900434973	No Hit
GGCTGCGGGATTGCGAGCTGGGCACGGAGCAGGCGCCATGGTTCTGCTGCACGTGC	31	0.12370804900434973	No Hit
GGCTGCGGGGCTTCTGTTTGCCCTTTACACTGTCCAAGTAAGTAAATAACTGCCCA	30	0.11971746677840298	No Hit
GGCTGCGGGGTGTCGTGCGAGCGCCGGGAACGAGCACTGCCTGGGCAGAACACAGC	30	0.11971746677840298	No Hit
GGCTGCGGGGAGTTCCCAGGCGCTTGGGGGCCCGCGCTGGCCTGGGAGGAGTAGCC	28	0.11173630232650944	No Hit
GGCTGCGGGGAAGGAGCCATTATATCACAGTAATGTCCGACCCATAATCTCTTTTC	28	0.11173630232650944	No Hit
GGCTGCGGGAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTGCCCCACTGGCTT	27	0.10774572010056266	No Hit
GGCTGCGGGAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCTTGCAAA	27	0.10774572010056266	No Hit
GGCTGCGGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGGACACTGACTCCACTTCC	26	0.1037551378746159	No Hit
GGCTGCGGGCTGTTCCGTTTTGGTTGATGGGTGTTTGGGAGGGGGCTGCGGGGGAT	26	0.1037551378746159	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCATG	15	0.007847732	50.765785	50
GAGTTAG	15	0.007847732	50.765785	50
TGCCCAT	15	0.007847732	50.765785	49
ATAAACA	15	0.007847732	50.765785	50
TAGAGTT	15	0.007847732	50.765785	48
ACAGCGA	25	1.9450386E-5	50.355556	46
TCGTCTG	20	3.9634004E-4	50.355556	44
ATCGTCT	20	3.9634004E-4	50.355556	43
CAGCGAT	25	1.9450386E-5	50.355556	47
CATCGTC	20	3.9634004E-4	50.355556	42
GTAGAGT	15	0.008104294	50.355553	47
TAATTCC	15	0.008104294	50.355553	46
CAAAGTA	15	0.008104294	50.355553	43
TTAATTC	15	0.008104294	50.355553	45
TTCATCG	20	4.0032263E-4	50.254032	40
ATGACAA	15	0.008169397	50.254032	39
TGACAAA	15	0.008169397	50.254032	40
GACAAAG	15	0.008169397	50.254032	41
TCATCGT	20	4.0032263E-4	50.254032	41
TTTGCGG	25	1.9685176E-5	50.254032	39

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content