Basic Statistics
Measure | Value |
---|---|
Filename | SRR1526818_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 47334 |
Sequences flagged as poor quality | 0 |
Sequence length | 64 |
%GC | 56 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCCCGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCAT | 494 | 1.0436472725736259 | No Hit |
GTCCCGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 418 | 0.8830861537161447 | No Hit |
GTCCCGGGGAGTATAAAAATTCGCCATTTTAAAAAGTGTAAAATTTGTGGTTATAGTATATTCA | 74 | 0.15633582625596823 | No Hit |
GTCCCGGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 68 | 0.14365994845143026 | No Hit |
GTCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAAT | 61 | 0.12887142434613597 | No Hit |
GTCCCGGGGTGGGGTGCATGACAGAGTCCCTTCTTCTGAGAAGGGAAAACATTGATCACCCTAG | 54 | 0.1140829002408417 | No Hit |
GTCCCGGGGGAGGAAGACTGGAACTTGATGTTTACTTGAATAAATGGTTCTAAATTTGGTTCTG | 50 | 0.10563231503781638 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCAGGT | 15 | 0.0045048688 | 58.495724 | 57 |
GTATATT | 25 | 8.120767E-6 | 58.495724 | 56 |
CCGAGTT | 15 | 0.004620469 | 58.123142 | 4 |
CCCGAGT | 15 | 0.004620469 | 58.123142 | 3 |
ACCGCTC | 15 | 0.0046399487 | 58.06151 | 46 |
AACTTTC | 15 | 0.0046399487 | 58.06151 | 44 |
GCCGACG | 20 | 1.9801725E-4 | 58.06151 | 51 |
AATCTGA | 15 | 0.0046399487 | 58.06151 | 55 |
GACGGGC | 15 | 0.0046399487 | 58.06151 | 54 |
CAACTTT | 15 | 0.0046399487 | 58.06151 | 43 |
ACTTTCG | 15 | 0.0046399487 | 58.06151 | 45 |
AGTATAT | 25 | 8.488412E-6 | 58.061504 | 55 |
TTATAGT | 25 | 8.488412E-6 | 58.061504 | 51 |
TATAGTA | 25 | 8.488412E-6 | 58.061504 | 52 |
ATAGTAT | 25 | 8.488412E-6 | 58.061504 | 53 |
GTTATAG | 25 | 8.488412E-6 | 58.061504 | 50 |
TAGTATA | 25 | 8.488412E-6 | 58.061504 | 54 |
CCCTGAA | 15 | 0.0046594893 | 58.0 | 37 |
ACAACCA | 15 | 0.0046594893 | 58.0 | 38 |
ACCATCC | 15 | 0.0046594893 | 58.0 | 41 |