SRR1526815_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526815_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	57516
Sequences flagged as poor quality	0
Sequence length	56
%GC	58

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GTCCCGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	1273	2.213297169483274	No Hit
GTCCCGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	628	1.0918700883232493	No Hit
GTCCCGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	336	0.5841852701856874	No Hit
GTCCCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	306	0.5320258710619654	No Hit
GTCCCGGGGCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAC	259	0.4503094791014674	No Hit
GTCCCGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	235	0.4085819598024897	No Hit
GTCCCGGGGCTTGGATCTATTCTTGGTAAGGGGAGGCGGTGGTGTTTCCTTGTGTT	176	0.30600180819250294	No Hit
GTCCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTA	148	0.25731970234369567	No Hit
GTCCCGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCTG	116	0.20168300994505878	No Hit
GTCCCGGGGATCCATTTCATGGAAATTCCACACTGTTTTATACAAGATCCTTGAAA	115	0.19994436330760135	No Hit
GTCCCGGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	106	0.18429654357048475	No Hit
GTCCCGGGGGCTGGGGCAGCAAAGTTCGTTTTCCTGGGTAGGGAAGAGCGATTCTC	99	0.17212601710828293	No Hit
GTCCCGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT	98	0.17038737047082553	No Hit
GTCCCGGGGATGATAGCTGGATATAGAGTTTTATTGTTTTATCGTCTGGTTGTATC	95	0.1651714305584533	No Hit
GTCCCGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCCAGCAAGCGC	92	0.15995549064608108	No Hit
GTCCCGGGGCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCC	91	0.15821684400862368	No Hit
GTCCCGGGGGTGGACTGGTGCCCCACTGGCTTCAAGGTTGGCATTAACTACCAGCC	91	0.15821684400862368	No Hit
GTCCCGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCCTGCCCAGCAAGCGC	88	0.15300090409625147	No Hit
GTCCCGGGGAGTATAAAAATTCGCCATTTTAAAAAGTGTAAAATTTGTGGTTATAG	83	0.14430767090896446	No Hit
GTCCCGGGGGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTC	82	0.14256902427150706	No Hit
GTCCCGAGGGTCGAGGCCTCTGTGGTTGTGCCGCGGGTTTGCTGCTGTGCTGAGTC	76	0.13213714444676264	No Hit
GTCCCGGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGAC	73	0.12692120453439043	No Hit
GTCCCGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTCC	71	0.12344391125947561	No Hit
GTCCCGGGGGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCC	68	0.1182279713471034	No Hit
GTCCCGGGGGGGGTTGGGGATTTAGCTCAGTGGTAAAGTGCTTGCCTAGCAAGCCC	67	0.116489324709646	No Hit
GTCCCGGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCT	64	0.1112733847972738	No Hit
GTCCCGGGGGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGT	64	0.1112733847972738	No Hit
GTCCCGGGGGGGGCTGGAGAGATGGCTCAGCAGTTAAGGGCACTGACTGCTCTTTC	63	0.1095347381598164	No Hit
GTCCCGGGGAGGGAAGATGGACGCAGCCACTTTGACATATGATACTCTCCGGTTTG	62	0.107796091522359	No Hit
GTCCCGGGGAGGAGGCATTTGAGCAATGACTTGAAGATGGGAAGGAAAGACTGTGA	62	0.107796091522359	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTTCAC	15	0.007946843	50.69088	50
ATCTTCT	20	4.0509974E-4	50.245834	45
CCGCATC	20	4.0509974E-4	50.245834	41
TCCATCA	15	0.008229099	50.24583	46
TGATGGT	15	0.008229099	50.24583	46
TGCAATC	15	0.008229099	50.24583	45
GCCGCAT	20	4.0686066E-4	50.20176	40
TTATACA	20	4.0686066E-4	50.20176	38
GCCTATG	20	4.0686066E-4	50.20176	39
CCTATGT	20	4.0686066E-4	50.20176	40
TATACAA	20	4.0686066E-4	50.20176	39
TTTTATA	20	4.0862765E-4	50.15776	36
GCCGTTA	20	4.1217997E-4	50.069996	29
CCGTTAA	20	4.1217997E-4	50.069996	30
CCACAAA	15	0.0083440645	50.069992	33
GGTCCTA	15	0.0083440645	50.069992	30
TATGCAG	15	0.0083440645	50.069992	30
CGTTAAA	15	0.0083440645	50.069992	31
GTTAAAG	15	0.0083440645	50.069992	32
CAGGTCC	15	0.008372991	50.026226	28

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content