SRR1526795_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526795_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	69643
Sequences flagged as poor quality	0
Sequence length	56
%GC	57

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
TGCGGAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	268	0.38481972344672116	No Hit
TGCGGAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	227	0.3259480493373347	No Hit
TGCGGAGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	170	0.2441020633803828	No Hit
TGCGGAGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	154	0.22112775153281736	No Hit
TGCGGAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT	127	0.1823586002900507	No Hit
TGCGGAGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCTG	124	0.17805091681863217	No Hit
TGCGGAGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCT	116	0.16656376089484945	No Hit
TGCGGAGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCC	114	0.16369197191390378	No Hit
TGCGGAGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGAC	111	0.15938428844248523	No Hit
TGCGGAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTCTTCC	108	0.15507660497106673	No Hit
TGCGGAGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	108	0.15507660497106673	No Hit
TGCGGAGGGGCTCACACTCCGCCGCCGGCTTACACTGCGCTTCTTGCCGCTCCTCC	106	0.15220481599012106	No Hit
TGCGGAGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGG	100	0.14358944904728402	No Hit
TGCGGAGGGGACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCTTGCAAACA	96	0.13784587108539265	No Hit
TGCGGAGGGATGTGTGTAAAATTTTTATTTATAGCTTCCTTGCACAGCAATAAGTG	90	0.1292305041425556	No Hit
TGCGGAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGGGGG	89	0.12779460965208275	No Hit
TGCGGAGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTCCTC	88	0.12635871516160993	No Hit
TGCGGAGGGGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAACCAAA	86	0.12348692618066426	No Hit
TGCGGAGGGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	85	0.1220510316901914	No Hit
TGCGGAGGGGATCCCCTCGACCACTCCTTTGGCGCTTCGCTGTCGACCGTGCGCTT	83	0.11917924270924572	No Hit
TGCGGAGGGCAGCTTTCAAGGAAGGGATGGCCTTGGAGGACTATCAAAGGATGCTT	82	0.11774334821877289	No Hit
TGCGGAGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	82	0.11774334821877289	No Hit
TGCGGAGGGGAGCTGGAGCGTGGAAACTACCCGGTCAAAGGATGCTGAGTCCCGAG	81	0.11630745372830005	No Hit
TGCGGAGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGCGCA	79	0.11343566474735438	No Hit
TGCGGAGGGATGACAGAAAGGTGGAATAAACATTAAATTTGTGCATTCTTTGGTAA	76	0.10912798127593584	No Hit
TGCGGAGGGGATAGTAGAGGCCACAGGAAGACCGTCGTGGAGAAGCCCCGATGGCT	74	0.10625619229499017	No Hit
TGCGGAGGGGGGCTGGTGAGATGGCTCAGTTGGTAAGAGTACCCGACTGCTCTTCC	73	0.10482029780451733	No Hit
TGCGGAGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCTT	72	0.1033844033140445	No Hit
TGCGGAGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCCATG	70	0.1005126143330988	No Hit
TGCGGAGGGGGAGCAGCTGGACAACGAGCGAGTTGGGATGGCTACCAGCTGGGGCA	70	0.1005126143330988	No Hit
TGCGGAGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCT	70	0.1005126143330988	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACCA	20	3.8917494E-4	50.670563	48
AGTCCGT	15	0.007966647	50.670563	48
AGGGTTA	20	3.8917494E-4	50.670563	50
CCCACTT	15	0.007966647	50.670563	49
CCACTTT	15	0.007966647	50.670563	50
AAATTAG	15	0.007966647	50.670563	49
CAACCAA	25	1.9101513E-5	50.67056	49
ACTGTTG	15	0.008199411	50.303116	47
CACCCAC	15	0.008199411	50.303116	47
TGAGTCC	20	4.0487343E-4	50.266666	46
ATAATGC	15	0.008270217	50.19392	41
ATGTGGA	20	4.0778096E-4	50.19392	40
TAGCCCT	15	0.008270217	50.19392	44
TAGGCTC	15	0.008270217	50.19392	41
TGGGATT	15	0.008270217	50.19392	40
TATAATG	15	0.008270217	50.19392	40
TGCACCC	15	0.008270217	50.19392	45
GTCTGAA	15	0.008317673	50.121387	39
GCTGGTA	15	0.008317673	50.121387	39
CCGCTTG	15	0.008317673	50.121387	39

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content