SRR1526759_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526759_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	132597
Sequences flagged as poor quality	0
Sequence length	56
%GC	53

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAGGAGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	1446	1.0905224100092763	No Hit
GAGGAGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	895	0.6749775635949531	No Hit
GAGGAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	730	0.5505403591333137	No Hit
GAGGAGGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	420	0.3167492477205367	No Hit
GAGGAGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCTG	393	0.2963867960813593	No Hit
GAGGAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	353	0.2662202010603558	No Hit
GAGGAGGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	323	0.24359525479460317	No Hit
GAGGAGGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTGTGC	287	0.21644531927570007	No Hit
GAGGAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	276	0.20814950564492407	No Hit
GAGGAGGGGGTGCAGTGCTGAGGAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA	274	0.20664117589387393	No Hit
GAGGAGGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCT	268	0.20211618664072337	No Hit
GAGGAGGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGAC	249	0.18778705400574672	No Hit
GAGGAGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	196	0.1478163156029171	No Hit
GAGGAGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT	191	0.14404549122529167	No Hit
GAGGAGGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCT	182	0.1372580073455659	No Hit
GAGGAGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	182	0.1372580073455659	No Hit
GAGGAGGGGGATCCCCTCGACCACTCTTTTGGCGCTTCGCTGTCGACAGTGCGCTT	179	0.13499551271899063	No Hit
GAGGAGGGGGACTACCATCAGCAATAGAAGGCCCTACACCAGTTTCAGCACTACTA	175	0.1319788532168903	No Hit
GAGGAGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGCGCA	171	0.12896219371478992	No Hit
GAGGAGGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCA	169	0.12745386396373976	No Hit
GAGGAGGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCCATG	166	0.1251913693371645	No Hit
GAGGAGGGGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	164	0.1236830395861143	No Hit
GAGGAGGGGGATACTGGTCCTGAAGTCTACCAAATATTATAGTGCATTTTAGCCTA	164	0.1236830395861143	No Hit
GAGGAGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGGGGG	164	0.1236830395861143	No Hit
GAGGAGGGGGAGTGCAGTGCTGAGGAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAA	159	0.1199122152084889	No Hit
GAGGAGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCT	154	0.11614139083086344	No Hit
GAGGAGGGGCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAC	153	0.11538722595533836	No Hit
GAGGAGGGGGAGATTCTCGGACCTCGGCGACCTCCGGGGATCCGAGTTTGCAGACT	146	0.11010807182666275	No Hit
GAGGAGGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGG	146	0.11010807182666275	No Hit
GAGGAGGGGAGTGCAGTGCTGAGGAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA	136	0.10256642307141187	No Hit
GAGGAGGTGGCTTAGAGCTGTCTTAGTCACTAAAGCATGGGAGCAGTGTGAACTCT	136	0.10256642307141187	No Hit
GAGGAGGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCAA	133	0.10030392844483661	No Hit
GAGGAGGGGGGTCTTCACACTCACGGTCCACACCTCCCCGAGGTCCTGTTCCCTAG	133	0.10030392844483661	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAAGCT	15	0.007992508	50.654907	49
TAGCCTA	25	1.9233177E-5	50.654907	50
ACTACTA	15	0.007992508	50.654907	50
AGAATCA	15	0.007992508	50.654907	48
GCACTAC	15	0.007992508	50.654907	48
ACGGGGT	15	0.008237668	50.269405	45
TCAGCAC	15	0.008237668	50.269405	45
CATACTA	15	0.008237668	50.269405	45
ACATGCT	15	0.008237668	50.269405	45
TCACGTG	15	0.008237668	50.269405	47
TACGAGC	15	0.008250072	50.250286	44
GATAAAC	20	4.0687976E-4	50.250282	44
TACCTCA	25	2.0259513E-5	50.212086	43
GTTGACA	15	0.008312295	50.154896	41
TTTGATA	20	4.107149E-4	50.154896	41
TGTGACG	15	0.008337282	50.116844	39
TGTTGAC	15	0.008337282	50.116844	40
TAGTGCA	25	2.0488527E-5	50.116844	40
CGTGTGA	15	0.008349797	50.09784	37
TAAGATC	20	4.1302975E-4	50.097836	37

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content