SRR1526747_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526747_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	56790
Sequences flagged as poor quality	0
Sequence length	56
%GC	54

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
TGTCACGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	507	0.8927628103539356	No Hit
TGTCACGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	322	0.5670012326113752	No Hit
TGTCACGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	251	0.4419792216939602	No Hit
TGTCACGGGGGCGTTCTCTTGGAACGCGCAGCAGAACGAGGTTCTGGTGACCCTAG	207	0.36450079239302696	No Hit
TGTCACGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	158	0.27821799612607856	No Hit
TGTCACGGGGCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGTCCCAAGAAACA	149	0.2623701355872513	No Hit
TGTCACGGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACA	148	0.26060926219404823	No Hit
TGTCACGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	137	0.24123965486881493	No Hit
TGTCACGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	128	0.22539179432998768	No Hit
TGTCACGGGTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCTCTCC	126	0.22187004754358164	No Hit
TGTCACGGGATCGGAGGTGGACAGAAGGTCAATGATGACATTATTGTCAACTGGGT	112	0.19721782003873922	No Hit
TGTCACGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCTG	104	0.183130832893115	No Hit
TGTCACGGGATTCCTAACCCAAACTTCCAGAAGCTTATAAATTTTACCTCTTACCT	104	0.183130832893115	No Hit
TGTCACGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCTT	104	0.183130832893115	No Hit
TGTCACGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	101	0.1778482127135059	No Hit
TGTCACGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGG	99	0.17432646592709986	No Hit
TGTCACGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCT	99	0.17432646592709986	No Hit
TGTCACGGGGATTTTTAAATAAAACCAAAGAATTACCATGTAATGCAAAGCACACA	99	0.17432646592709986	No Hit
TGTCACGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGACT	96	0.16904384574749076	No Hit
TGTCACGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGAC	94	0.16552209896108472	No Hit
TGTCACGGGGGCCATCTATGATATCTGTCGTAGAAACCTCGACATTGAGCGCCCAA	89	0.15671773199506955	No Hit
TGTCACGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	87	0.1531959852086635	No Hit
TGTCACGGGGACGTGATCTCAGCACCATCCAGTTAAAAGGAGGTGCAGGGCCCTGT	81	0.14263074484944532	No Hit
TGTCACGGGAGGGTACTGTCTGCTTCTGCCACATACAAGCCATGCACCTTGGGCGC	81	0.14263074484944532	No Hit
TGTCACGGGATTCTGTATTGTGTAAGGTTGGAGAGTGAGCCCTTCGTAGTAATAAC	80	0.1408698714562423	No Hit
TGTCACGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCT	80	0.1408698714562423	No Hit
TGTCACGGGGAGGGAGAAGCTGTGCTTCCTGGACAAGGTAGAGCCTCAGGCCACCA	76	0.1338263778834302	No Hit
TGTCACGGGGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAGT	72	0.12678288431061807	No Hit
TGTCACGGGGAGATTCTCGGACCTCGGCGACCTCCGGGGATCCGAGTTTGCAGACT	72	0.12678288431061807	No Hit
TGTCACGGGGGATGGGTGTGTGTCTGTCTTGGGATGGGGTGTTCTTGCACCACTTT	70	0.12326113752421201	No Hit
TGTCACGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTGTGC	69	0.12150026413100898	No Hit
TGTCACGGGGAACAAGCTGCCCCAGCAGCACACACAGCACAGTGTAAACTGTTTCT	68	0.11973939073780596	No Hit
TGTCACGGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGC	68	0.11973939073780596	No Hit
TGTCACGGGGGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAG	67	0.11797851734460293	No Hit
TGTCACGGGATGGTGGAGGGCGTTGATCCATATGGCCACCTCCTGCCCAGTTAAGG	66	0.1162176439513999	No Hit
TGTCACGGGGTCCAGGACACGAAGGCACCTGGCTGAGTTCACTCACGTGGAAGCTG	65	0.11445677055819686	No Hit
TGTCACGGGATTTCTAAAATTTTTATTTGCAGGGAAGTCTCAGTACTGGCAGTTTC	63	0.11093502377179082	No Hit
TGTCACGGGGATTGCTGAGGCGGCGAGGGAGAGCGTTGGGCTTACCTCACTGCTTT	62	0.10917415037858778	No Hit
TGTCACGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTCCTG	61	0.10741327698538475	No Hit
TGTCACGGGAGAGCAGGTGCCATCCTGTGGAAGAACCATGAAGCACTACGAGGTGG	59	0.1038915301989787	No Hit
TGTCACGGGGGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTG	59	0.1038915301989787	No Hit
TGTCACGGGGTGGGTGGTGATAAATGGTACTTAGAGATGAGATGTCATAAGGAGAT	58	0.10213065680577567	No Hit
TGTCACGGGTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTC	58	0.10213065680577567	No Hit
TGTCACGGGGATCCCCTCGACCACTCCTTTGGCGCTTCGCTGTCGACCGTGCGCTT	58	0.10213065680577567	No Hit
TGTCACGGGGAGCGCCCGGCTGCTGGCCCTGGTGGTTCTGTTCTTTATCGTTGGTG	58	0.10213065680577567	No Hit
TGTCACGGGGAGAGTAATGTGTTGTTTTTTAAAAATGAGCATCTTCTGTATGTATC	57	0.10036978341257263	No Hit
TGTCACGGGGCTCTTAGAACCTTCCTGCGGTCGTGCTTGCATCTCGCTGCTGCAGC	57	0.10036978341257263	No Hit
TGTCACGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT	57	0.10036978341257263	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCTGTC	15	0.007964574	50.661594	48
GGTCGTC	15	0.007964574	50.661594	49
CCCAGTT	15	0.008221606	50.25666	46
TCGATCC	15	0.008221606	50.25666	45
ACCGTGC	15	0.008221606	50.25666	46
CCTCCCG	15	0.008221606	50.25666	45
TCTCGAT	15	0.008221606	50.25666	43
TTCTCGA	15	0.008221606	50.25666	42
AATGGTT	15	0.008221606	50.25666	42
GTGGTCG	15	0.008221606	50.25666	47
CCGATTG	15	0.008221606	50.25666	43
CGACCGT	15	0.008221606	50.25666	44
CGTCTGT	15	0.008221606	50.25666	42
CTCGATC	15	0.008221606	50.25666	44
TAATGGT	15	0.008250541	50.212067	41
TCACCAC	15	0.008250541	50.212067	41
TGTCGAC	15	0.008250541	50.212067	41
CTGTCGA	15	0.008308639	50.12312	40
TGCGTAA	15	0.008337801	50.078762	37
TGACATT	15	0.008337801	50.078762	36

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content