SRR1526668_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526668_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	101755
Sequences flagged as poor quality	0
Sequence length	64
%GC	57

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GCCCTCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCAT	4603	4.523610633384109	No Hit
GCCCTCGGGCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTG	479	0.4707385386467496	No Hit
GCCCTCGGGCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATT	444	0.43634219448675743	No Hit
GCCCTCGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCTCTCCCCG	443	0.4353594417964719	No Hit
GCCCTCGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	336	0.3302049039359245	No Hit
GCCCTCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTC	280	0.2751707532799371	No Hit
GCCCTCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCC	239	0.23487789297823203	No Hit
GCCCTCGGGGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTG	205	0.20146430150852537	No Hit
GCCCTCGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCC	196	0.192619527295956	No Hit
GCCCTCGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	186	0.18279200039310106	No Hit
GCCCTCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTCCGAAGGTC	155	0.1523266669942509	No Hit
GCCCTCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTC	152	0.1493784089233944	No Hit
GCCCTCGGGGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG	150	0.14741290354282346	No Hit
GCCCTCGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCTGAGACGCGT	148	0.14544739816225247	No Hit
GCCCTCGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGGCCGCCGCC	146	0.1434818927816815	No Hit
GCCCTCCACCATATCACACATTCGAGGAACCAACCTATGTAAAAGTAAAATAAGAAAGGAAGGA	141	0.13856812933025403	No Hit
GCCCTCGGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAGTGTTTGA	131	0.12874060242739915	No Hit
GCCCTCGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGCGCAGCTCGCTC	128	0.12579234435654268	No Hit
GCCCTCGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCTGAGACGCG	124	0.12186133359540072	No Hit
GCCCTCGGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAAAGGTCC	120	0.11793032283425875	No Hit
GCCCTCGGGACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTC	119	0.11694757014397326	No Hit
GCCCTCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCC	115	0.11301655938283131	No Hit
GCCCTCGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCTGAAGGTCAT	115	0.11301655938283131	No Hit
GCCCTCGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCT	111	0.10908554862168936	No Hit
GCCCTCGGGGGGTGGCCACAAGCTTGGCCTAGGACTGGAATTTCAAGCATAAATGAATATTGTA	106	0.10417178517026189	No Hit
GCCCTCGGGGGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAGTGTTTGAA	104	0.10220627978969092	No Hit
GCCCTCGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCAACACCTCC	102	0.10024077440911995	No Hit
GCCCTCGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCAACACCTCCT	102	0.10024077440911995	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGACCG	15	0.0045157885	58.509216	43
CCAACGG	15	0.0045157885	58.509216	42
ATCCGAG	15	0.004533644	58.45097	40
TAATATC	15	0.0045875264	58.276924	20
TGCATAC	15	0.0046509905	58.075172	52
CTTGCGA	15	0.0046509905	58.075172	48
CATACAG	15	0.0046509905	58.075172	54
CGCACCT	15	0.0046509905	58.075172	49
CCTTGCG	15	0.0046509905	58.075172	47
ATACAGT	15	0.0046509905	58.075172	55
AACACTA	25	8.54692E-6	58.075172	48
GATTTGC	15	0.004678388	57.989136	37
TATCTGG	20	2.003442E-4	57.989136	36
GATGCCT	15	0.004678388	57.989136	37
ATTTCCG	20	2.003442E-4	57.989136	37
CCAGTTA	15	0.0046967203	57.93192	35
AAAATCT	15	0.0046967203	57.93192	35
GTAGGAT	15	0.0047243186	57.846306	33
CCCGTCA	15	0.0047243186	57.846306	34
ATCCAGT	15	0.0047243186	57.846306	33

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content