SRR1526629_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526629_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	93697
Sequences flagged as poor quality	0
Sequence length	56
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CACAAGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	921	0.9829556976210552	No Hit
CACAAGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	541	0.5773930862247457	No Hit
CACAAGGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	408	0.43544617223603743	No Hit
CACAAGGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	342	0.36500635025667844	No Hit
CACAAGGGGGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAACCAAA	294	0.3137773888171446	No Hit
CACAAGGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGAC	232	0.24760664695774678	No Hit
CACAAGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGCGCA	200	0.21345400599805756	No Hit
CACAAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	185	0.19744495554820324	No Hit
CACAAGGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCC	178	0.18997406533827124	No Hit
CACAAGGGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACA	161	0.17183047482843633	No Hit
CACAAGGGGGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGGTGACAGCATTG	156	0.1664941246784849	No Hit
CACAAGGGGCCATCTCATCCCTGAGCCATGATCAAACTCTACGTACTGAGTCGGAG	154	0.16435958461850433	No Hit
CACAAGGGGGAGGATCGTCCAGAGTTATACTACGCAGGCGCCCGCTCTCTGCGCTC	145	0.15475415434859174	No Hit
CACAAGGGGAGGCTGTTCCCGTTATGTAAGTCAGTTCTTCAGGCTCATTTGCTGTG	142	0.15155234425862088	No Hit
CACAAGGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	141	0.15048507422863058	No Hit
CACAAGGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTGTGC	139	0.14835053416865002	No Hit
CACAAGGGGGATAGTAGAGGCCACAGGAAGACCGTCGTGGAGAAGCCCCGATGGCT	139	0.14835053416865002	No Hit
CACAAGGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGG	133	0.1419469139887083	No Hit
CACAAGGGGGGTGTTCGTCATGTCGGCGTCTGTGGTGTCCGTCATCTCCCGGTTCC	129	0.13767783386874713	No Hit
CACAAGGGGTACTACCTCACTCTTTACGTACGTGGTGACTGTACGCACAGTCTGTG	128	0.13661056383875683	No Hit
CACAAGGGGGGGAATTCCTTCGGCAACATTAACTGGTTGATGCTGAAAAACATCGA	122	0.1302069436588151	No Hit
CACAAGGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCCATG	121	0.12913967362882484	No Hit
CACAAGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGGGGG	120	0.12807240359883454	No Hit
CACAAGGGGAAAGTATATGACCATGAGATTGCTTCAGTATTTAGTTCTTTCTAAAA	119	0.12700513356884424	No Hit
CACAAGGGGGGGGAACATGGAAGAGGACAACTGGAGATGGCATTTCTATGACACTG	111	0.11846697332892195	No Hit
CACAAGGGGCAACCATCTGTTCAGTTACAGTGTACTCATATGTATAAAATAAATAA	109	0.11633243326894137	No Hit
CACAAGGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTCCTG	108	0.1152651632389511	No Hit
CACAAGGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCAA	108	0.1152651632389511	No Hit
CACAAGGGGAGACTTGTATATCCATATCTCCATGGCAGTGAGAAACGGTAGCTTAG	108	0.1152651632389511	No Hit
CACAAGGGGAGGAGGGGCCCATCCCTCTCCCAGGCATTCATCAGCCTGCTGCCTTC	107	0.1141978932089608	No Hit
CACAAGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	105	0.11206335314898022	No Hit
CACAAGGGGCTAACCAGAGCTGAACTAAGGCTGCTCCATCAACACTCCAGGCCCCT	104	0.11099608311898994	No Hit
CACAAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	101	0.10779427302901906	No Hit
CACAAGGGGGACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCTTGCAAACA	98	0.10459246293904821	No Hit
CACAAGGGGAACTTTGCTTGCGGTAGATTTTCTTTAAAAGAATGGGCAGTTACATG	95	0.10139065284907735	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGGCTA	45	1.1823431E-10	50.603046	36
CGAACTG	15	0.008017454	50.603043	34
GAGCTCA	20	3.924534E-4	50.603043	37
CCGTCGC	20	3.924534E-4	50.603043	36
GCCGTCG	20	3.924534E-4	50.603043	35
CTGCCGT	20	3.966881E-4	50.493217	33
GCGAACT	15	0.008086662	50.493214	33
AAAGGAT	15	0.008086662	50.493214	33
GGGTAGT	15	0.008104033	50.46583	31
CGTTAAA	55	0.0	50.46583	31
GTTAAAG	55	0.0	50.46583	32
TCGAGGA	15	0.008104033	50.46583	32
AGCTACC	15	0.008104033	50.46583	31
ACGATTC	25	1.9999225E-5	50.302162	48
ACAGCAT	20	4.0418608E-4	50.302162	48
TATCTCA	15	0.008208844	50.30216	48
ACTACTC	15	0.008208844	50.30216	46
ATTATCT	15	0.008208844	50.30216	46
CACAACC	30	9.951455E-7	50.30216	47
CCCGGTT	15	0.008208844	50.30216	48

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content