SRR1526608_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526608_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	142290
Sequences flagged as poor quality	0
Sequence length	56
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCAGGAGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	642	0.45119122917984394	No Hit
GCAGGAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	598	0.4202684658092628	No Hit
GCAGGAGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	508	0.3570173589148921	No Hit
GCAGGAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	390	0.27408812987560616	No Hit
GCAGGAGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCC	368	0.25862674819031556	No Hit
GCAGGAGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	358	0.2515988474242744	No Hit
GCAGGAGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCT	268	0.18834774052990372	No Hit
GCAGGAGGGGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAACCAAA	242	0.17007519853819664	No Hit
GCAGGAGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTGTGC	240	0.1686696183849884	No Hit
GCAGGAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT	239	0.16796682830838428	No Hit
GCAGGAGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	236	0.1658584580785719	No Hit
GCAGGAGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCT	183	0.12861058401855366	No Hit
GCAGGAGGGAAAGCGAAGGCATCGATTACATAAGTTCCTATGTCTCAGAGTCGGAA	176	0.12369105348232483	No Hit
GCAGGAGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCTG	173	0.12158268325251247	No Hit
GCAGGAGGGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	160	0.11244641225665894	No Hit
GCAGGAGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCCAGCAAGCGC	144	0.10120177103099305	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTTTAG	15	0.008046823	50.570156	34
AGGCGAT	20	3.9442745E-4	50.570156	34
TCGATGA	15	0.008046823	50.570156	36
ATCGATG	15	0.008046823	50.570156	35
TCATCGA	15	0.008138097	50.426132	33
TAAGTTC	35	4.9058144E-8	50.42613	31
TATTCTC	15	0.00831131	50.158287	46
ACTCGCC	30	1.0188487E-6	50.158287	40
CTCTGAT	15	0.00831131	50.158287	39
TCTTTCG	15	0.00831131	50.158287	46
CGCATCA	15	0.008322953	50.14053	43
ATGAGTG	20	4.1139804E-4	50.14053	43
TAACACA	25	2.0438867E-5	50.14053	44
TTCGCAC	20	4.1139804E-4	50.14053	45
TCTATTC	15	0.008322953	50.14053	44
ATGACAA	20	4.1211752E-4	50.12279	38
TCACTAG	15	0.00833461	50.12279	42
AGTACTC	15	0.00833461	50.12279	38
CGCACTG	15	0.0083813565	50.051945	41
ATAAGTT	35	5.290167E-8	49.946053	30