SRR1526560_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526560_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	26932
Sequences flagged as poor quality	0
Sequence length	56
%GC	37

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
AAAGTTGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	575	2.135006683499183	No Hit
AAAGTTGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	509	1.889945046784494	No Hit
AAAGTTGGGGAGTGCAGTGCTAAAGTTGGGAAAAAAAAAAAAAAAAAAAAAAAAAA	236	0.8762810040100995	No Hit
AAAGTTGGGGGTCGTGTGGTGGGGAGAAGAGGACAGGGCGGATCGTGAGCCGAGCA	210	0.7797415713649191	No Hit
AAAGTTGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	161	0.5978018713797713	No Hit
AAAGTTGGGGAGTGCAGTGCTAAAGTTGGGGAAAAAAAAAAAAAAAAAAAAAAAAA	107	0.397296895885935	No Hit
AAAGTTGGGAGTGCAGTGCTAAAGTTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA	76	0.28219218773206595	No Hit
AAAGTTGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	74	0.2747660775285905	No Hit
AAAGTTGGGGAGTGCAGTGCTAAAGTTGGGGGAAAAAAAAAAAAAAAAAAAAAAAA	70	0.25991385712163967	No Hit
AAAGTTGGGCCATCTCATCCCTGAGCCATGATCAAACTCTACGTACTGAGTCGGAG	70	0.25991385712163967	No Hit
AAAGTTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	66	0.24506163671468884	No Hit
AAAGTTGGGCATGCTGGCCCTCTCTGGGTATGTCCAGGGCTGCCGGGCTCTCATGA	58	0.21535719590078717	No Hit
AAAGTTGGGCCATCTCATCCCTGCGTGTCTCCGACTCAGTACGTAGAGTTTGATCA	56	0.20793108569731175	No Hit
AAAGTTGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	56	0.20793108569731175	No Hit
AAAGTTGGGGTGATGTGGGTGTGGTACCCGAGTAGCGCGGGACTCGTGAAATCTCG	54	0.2005049754938363	No Hit
AAAGTTGGGGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	52	0.19307886529036092	No Hit
AAAGTTGGGGATTCCAGTAGTATTTATGTTGAAAGAAGCAAATTTTAGTCCTTCCA	48	0.17822664488341008	No Hit
AAAGTTGGGGTGCAGTGCTAAAGTTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA	47	0.17451358978167236	No Hit
AAAGTTGGGAGTGCAGTGCTAAAGTTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAA	47	0.17451358978167236	No Hit
AAAGTTGGGAATTCTCAAGCAAAGATACCGCCTGACTCGGAGCTAAAGTTGGCTGA	47	0.17451358978167236	No Hit
AAAGTTGGGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	44	0.16337442447645925	No Hit
AAAGTTGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGA	44	0.16337442447645925	No Hit
AAAGTTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	44	0.16337442447645925	No Hit
AAAGTTGGGGAGTGCAGTGCTAAAGTTGGGGGGAAAAAAAAAAAAAAAAAAAAAAA	42	0.1559483142729838	No Hit
AAAGTTGGGGTGCAGTGCTAAAGTTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA	40	0.1485222040695084	No Hit
AAAGTTGGGAGTGCAGTGCTAAAGTTGGGGGAAAAAAAAAAAAAAAAAAAAAAAAA	40	0.1485222040695084	No Hit
AAAGTTGGGCCATCTCATCCCTGAGCCAGGATCAAACTCTACGTACTGAGTCGGAG	39	0.1448091489677707	No Hit
AAAGTTGGGAAGCATGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	38	0.14109609386603297	No Hit
AAAGTTGGGCCATCTCATCCCTGCGTGTCTCCGACTCAGTACGTAGAGTTTGATCC	38	0.14109609386603297	No Hit
AAAGTTGGGGTGTGGCCATCAAGATCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAA	36	0.13366998366255756	No Hit
AAAGTTGGGGTGTGGCCATCAAGATCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	35	0.12995692856081983	No Hit
AAAGTTGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	35	0.12995692856081983	No Hit
AAAGTTGGGATGGCGAAAGAGATCGGTGCTGTCAAATACCTGGAGTGCTCAGCTCT	34	0.12624387345908214	No Hit
AAAGTTGGGCAGAGTGCAGTGCTAAAGTTGGGAAAAAAAAAAAAAAAAAAAAAAAA	33	0.12253081835734442	No Hit
AAAGTTGGGGTCTGCCCCCAGCCCAGACACCGAAGCTACTCTCCTTCCAGTCCACA	32	0.11881776325560671	No Hit
AAAGTTGGGACGCGCGAGCCACATCGTCTGTGGTCGTCCGGTATCCGAAGTCCCCG	31	0.115104708153869	No Hit
AAAGTTGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	30	0.1113916530521313	No Hit
AAAGTTGGGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30	0.1113916530521313	No Hit
AAAGTTGGGGAGTGCAGTGCTAAAGTTGGGTAAAAAAAAAAAAAAAAAAAAAAAAA	30	0.1113916530521313	No Hit
AAAGTTGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30	0.1113916530521313	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCGGAT	20	3.7945554E-4	50.81369	37
CTCTACG	50	5.456968E-12	50.813686	37
ACTCTAC	50	5.456968E-12	50.717266	36
AACTCTA	50	5.456968E-12	50.717266	35
GGGCGGA	20	3.830425E-4	50.717266	36
TCAAACT	50	5.456968E-12	50.52552	32
GTACTGA	50	5.456968E-12	50.335217	43
TCTACGT	50	5.456968E-12	50.335217	38
TACGTAC	50	5.456968E-12	50.335217	40
TACTGAG	50	5.456968E-12	50.335217	44
CTACGTA	50	5.456968E-12	50.335217	39
ATCAAAC	45	1.1823431E-10	50.335217	31
TGAGTCG	45	1.1823431E-10	50.335217	47
AACACCC	15	0.008123739	50.335217	48
GGTAAAG	15	0.008123739	50.335217	38
GTTTGAT	20	3.9766068E-4	50.335213	48
GGATCGT	20	3.9766068E-4	50.335213	40
GAGCCGA	20	3.9766068E-4	50.335213	47
GGACAGG	20	3.9766068E-4	50.335213	31
CGGATCG	20	3.9766068E-4	50.335213	39

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content