SRR1526506_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526506_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	107600
Sequences flagged as poor quality	0
Sequence length	56
%GC	48

Per base sequence quality

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTATTGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	1253	1.1644981412639406	No Hit
CGTATTGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	627	0.5827137546468402	No Hit
CGTATTGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGAC	371	0.3447955390334572	No Hit
CGTATTGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	347	0.3224907063197026	No Hit
CGTATTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTCGTATTGGGAAGCAGG	284	0.2639405204460966	No Hit
CGTATTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTCGTATTGGGAAGCAGT	256	0.23791821561338292	No Hit
CGTATTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	221	0.20539033457249073	No Hit
CGTATTGGGGTATGCTAAGGCCCGCCCCTCACCCCTACTTTGGCCATCCGTAAGAT	215	0.19981412639405205	No Hit
CGTATTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGCGCA	205	0.19052044609665428	No Hit
CGTATTGGGTCTTGGAATTTTCTTTTGTTTGCTCCTGCATTTGACTAACTGTAATA	184	0.17100371747211895	No Hit
CGTATTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	182	0.16914498141263942	No Hit
CGTATTGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGACT	182	0.16914498141263942	No Hit
CGTATTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	179	0.16635687732342005	No Hit
CGTATTGGGCCATCTCATCCCTGAGCCATGATCAAACTCTACGTACTGAGTCGGAG	175	0.16263940520446096	No Hit
CGTATTGGGACCAAGGGATCTACAGAGTGAGCGAGTTTCCTGGAGAGGCCAGCGAG	153	0.14219330855018586	No Hit
CGTATTGGGGATCCCCTCGACCACTCCTTTGGCGCTTCGCTGTCGACCGTGCGCTT	144	0.13382899628252787	No Hit
CGTATTGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	137	0.12732342007434944	No Hit
CGTATTGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCTT	133	0.12360594795539034	No Hit
CGTATTGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGAGGCAGA	129	0.11988847583643122	No Hit
CGTATTGGGACTGTAGCGTTCTGGCTGCTTAACAGCTGGCTCTGGTTTCGACGCTA	128	0.11895910780669146	No Hit
CGTATTGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	126	0.1171003717472119	No Hit
CGTATTGGGCCATCTCATCCCTGAGCCAGGATCAAACTCTACGTACTGAGTCGGAG	126	0.1171003717472119	No Hit
CGTATTGGGGGTGTGTTTGCCTGGAAGTCCCTCGCCCACAGTGTGTGTTCACACCG	126	0.1171003717472119	No Hit
CGTATTGGGGATAGTAGAGGCCACAGGAAGACCGTCGTGGAGAAGCCCCGATGGCT	125	0.11617100371747212	No Hit
CGTATTGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGG	123	0.11431226765799257	No Hit
CGTATTGGGGGAGCTGGCAACCTGAGGAAGCTGTACACGCTCCTGAATAACTGCAT	123	0.11431226765799257	No Hit
CGTATTGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCT	120	0.11152416356877323	No Hit
CGTATTGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAG	114	0.10594795539033458	No Hit
CGTATTGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	114	0.10594795539033458	No Hit
CGTATTGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCC	110	0.10223048327137546	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACAT	15	0.007952098	50.713135	37
ACGCACA	15	0.007952098	50.713135	37
GTCACCG	20	3.8852936E-4	50.713135	37
CAGTACG	25	1.9077757E-5	50.713135	37
TCAGTAC	25	1.9239049E-5	50.6411	36
TACGCAC	15	0.007996936	50.641098	36
GTTAAAA	15	0.007996936	50.641098	34
GAGGTCT	15	0.007996936	50.641098	36
CTACGCA	15	0.007996936	50.641098	35
AAAACTC	15	0.008072085	50.521492	33
CACTACG	15	0.008072085	50.521492	33
AGTTAAA	15	0.008072085	50.521492	33
GACACTA	15	0.008087177	50.49764	31
ACACTAC	15	0.008087177	50.49764	32
CACACGA	15	0.008087177	50.49764	31
ACCCGGA	15	0.008087177	50.49764	31
CGACTCA	25	1.9565023E-5	50.49764	32
CCAGTTA	15	0.008087177	50.49764	31
GTGCGAT	20	3.9678742E-4	50.49764	31
TTCACAC	15	0.0082239555	50.283966	48

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content