SRR1526494_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526494_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	109348
Sequences flagged as poor quality	0
Sequence length	56
%GC	51

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
AAAACGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	651	0.5953469656509492	No Hit
AAAACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	396	0.36214654131762813	No Hit
AAAACGGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	385	0.3520869151699162	No Hit
AAAACGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	332	0.30361780736730437	No Hit
AAAACGGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCC	294	0.2688663715842997	No Hit
AAAACGGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	240	0.21948275231371403	No Hit
AAAACGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCTG	226	0.20667959176208067	No Hit
AAAACGGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGG	219	0.20027801148626403	No Hit
AAAACGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCTT	215	0.1966199656143688	No Hit
AAAACGGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTCCT	210	0.19204740827449976	No Hit
AAAACGGGGTCCTCAGAGGGTCTGGAAACACACGGAGACTATAGAACCAGGCCCTT	195	0.17832973625489262	No Hit
AAAACGGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	162	0.14815085781175696	No Hit
AAAACGGGGAGCGGCCTGGAGTCGGAAGCAGAACGCACAGGACCACTTCTGCCCAA	153	0.1399202545999927	No Hit
AAAACGGGGCCATCTCATCCCTGAGCCAGGATCAAACTCTACGTACTGAGTCGGAG	152	0.13900574313201886	No Hit
AAAACGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGACT	146	0.13351867432417602	No Hit
AAAACGGGGCCATCTCATCCCTGAGCCATGATCAAACTCTACGTACTGAGTCGGAG	144	0.1316896513882284	No Hit
AAAACGGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCT	137	0.12528807111241175	No Hit
AAAACGGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCT	134	0.12254453670849032	No Hit
AAAACGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGCGCAG	126	0.11522844496469986	No Hit
AAAACGGGGCCATCTCATCCCTGCGTGTCTCCGACTCAGTACGTAGAGTTTGATCA	123	0.11248491056077843	No Hit
AAAACGGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGAC	121	0.11065588762483082	No Hit
AAAACGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	121	0.11065588762483082	No Hit
AAAACGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGCGCA	119	0.10882686468888321	No Hit
AAAACGGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	118	0.10791235322090938	No Hit
AAAACGGGGCCATCTCATCCCTGCGTGTCTCCGACTCAGTACGTAGAGTTTGATCC	118	0.10791235322090938	No Hit
AAAACGGGGGGGGCTGGCGAGATGGCTCAGTGGGTAAGAGCACGCGACTGCTCTTC	116	0.10608333028496178	No Hit
AAAACGGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTATTCC	113	0.10333979588104034	No Hit
AAAACGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGGGGG	112	0.10242528441306653	No Hit
AAAACGGGGGGTGGGGAGCTAAGGCAAGAGGATCAGGGGGTTGAGGCCAGCTTGGG	112	0.10242528441306653	No Hit
AAAACGGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCC	112	0.10242528441306653	No Hit
AAAACGGGGATAGTAGAGGCCACAGGAAGACCGTCGTGGAGAAGCCCCGATGGCTG	111	0.10151077294509273	No Hit
AAAACGGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGA	110	0.10059626147711892	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCCG	15	0.007973873	50.67864	37
TTAGATC	15	0.007973873	50.67864	37
GACTATA	20	3.8986545E-4	50.678635	37
TTCTTAG	15	0.008003336	50.63141	34
ACGCACA	30	9.682426E-7	50.513714	33
GCAATAG	15	0.008077348	50.513714	33
AGTCATC	20	4.0076184E-4	50.396564	31
GATTTAC	15	0.008181818	50.34986	48
CGGATTT	15	0.008181818	50.34986	46
ACAGACC	15	0.008181818	50.34986	46
TATTCTA	20	4.0260117E-4	50.349857	46
TGCTATT	20	4.0260117E-4	50.349857	48
TCTTGAA	15	0.00821185	50.30324	42
CGGCCAA	15	0.00821185	50.30324	45
TTCAACC	15	0.00821185	50.30324	43
CCTCGGA	15	0.00821185	50.30324	43
GTTACCC	15	0.00821185	50.30324	44
CTCGGAT	15	0.00821185	50.30324	44
ACTATTC	20	4.0444723E-4	50.303238	44
ATCCGTG	20	4.0444723E-4	50.303238	45

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content