SRR1526482_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526482_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28203
Sequences flagged as poor quality	0
Sequence length	56
%GC	35

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GGTACAGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	709	2.513916959188739	No Hit
GGTACAGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	338	1.198454065170372	No Hit
GGTACAGCTCATTATCAGAAAGGTTAAAGGTTTTTTCCTACTAAAACCATCCTCAC	283	1.0034393504237138	No Hit
GGTACAGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	271	0.9608906853880793	No Hit
GGTACAGGGCCATCTCATCCCTGAGCCATGATCAAACTCTACGTACTGAGTCGGAG	159	0.5637698117221572	No Hit
GGTACAGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	150	0.5318583129454314	No Hit
GGTACAGGGCCATCTCATCCCTGAGCCAGGATCAAACTCTACGTACTGAGTCGGAG	103	0.3652093748891962	No Hit
GGTACAGGGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	100	0.3545722086302876	No Hit
GGTACAGGGGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	92	0.32620643193986454	No Hit
GGTACAGGGCCATCTCATCCCTGCGTGTCTCCGACTCAGTACGTAGAGTTTGATCA	83	0.29429493316313865	No Hit
GGTACAGGGCCATCTCATCCCTGCGTGTCTCCGACTCAGTACGTAGAGTTTGATCC	81	0.28720348899053294	No Hit
GGTACAGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	62	0.21983476935077828	No Hit
GGTACAGGGGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	57	0.2021061589192639	No Hit
GGTACAGGGCTACGAATCAAAATTTAACCCAAAAAAAAAAAAAAAAAAAAAAAAAA	55	0.19501471474665816	No Hit
GGTACAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	48	0.170194660142538	No Hit
GGTACAGGGTACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40	0.14182888345211503	No Hit
GGTACAGGGGGTCTGCCCCAGCCCAGACACCGAAGCTACTCTCCTTCCAGTCCACA	39	0.13828316136581215	No Hit
GGTACAGGGATGAGATGGCTGAGCCAGGATCAAACTCTACGTACTGAGTCGGAGAC	39	0.13828316136581215	No Hit
GGTACAGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGA	38	0.1347374392795093	No Hit
GGTACAGGGGTGTGGCCATCAAGATCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	37	0.1311917171932064	No Hit
GGTACAGGGGGGAATTCCTGGCACTGGCTGGGTTCGCTACCGTAGCGCAGGCCGCC	35	0.12410027302060064	No Hit
GGTACAGGGTCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35	0.12410027302060064	No Hit
GGTACAGGGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35	0.12410027302060064	No Hit
GGTACAGGGAAGCATGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	34	0.12055455093429776	No Hit
GGTACAGGGAAGCATGGTATCCCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTT	32	0.11346310676169202	No Hit
GGTACAGGGGGCATGGCAACGCAGAGTTCGACCTTTTTTTTTTTTTTTTTTTTTTT	30	0.10637166258908627	No Hit
GGTACAGGGACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30	0.10637166258908627	No Hit
GGTACAGGGATGCCGTGCTCCTCAAACCTCGAATTTCTGTAAGCTAGATGGAGAGA	29	0.10282594050278339	No Hit
GGTACAGGGAAGTGGTCAAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29	0.10282594050278339	No Hit
GGTACAGGGCAGTTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTT	29	0.10282594050278339	No Hit
GGTACAGGGCATGCCATGGTGAAAAAAACCGCGATTGCGATTGCGGTGGCGCTGGC	29	0.10282594050278339	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCTACC	20	3.8422097E-4	50.69495	35
GCTACCG	20	3.8422097E-4	50.69495	36
CGGGCAA	20	3.8422097E-4	50.69495	34
TCGCTAC	20	3.8422097E-4	50.69495	34
CCTACTA	70	0.0	50.694946	37
TTTCCTA	70	0.0	50.694946	34
TTCCTAC	70	0.0	50.694946	35
GCAAACT	25	1.8751382E-5	50.694946	37
TGTTCGG	15	0.007901851	50.694942	35
GTTCGGC	15	0.007901851	50.694942	36
TTCGCTA	20	3.9113947E-4	50.512592	33
TTCCGGG	20	3.9113947E-4	50.512592	31
GGTTCGC	20	3.9113947E-4	50.512592	31
GAATGTT	15	0.008015523	50.512592	32
TCCGGGC	20	3.9113947E-4	50.512592	32
CCGGGCA	20	3.9113947E-4	50.512592	33
AATGTTC	15	0.008015523	50.512592	33
GTTCGCT	20	3.9113947E-4	50.512592	32
AACTGGA	20	4.052734E-4	50.151787	40
CTACTAA	70	0.0	50.151787	38

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content