SRR1526467_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526467_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	106232
Sequences flagged as poor quality	0
Sequence length	56
%GC	53

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GCGTCCGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGA	1836	1.728292793132013	No Hit
GCGTCCGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	1584	1.4910761352511486	No Hit
GCGTCCGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGAG	1389	1.30751562617667	No Hit
GCGTCCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	630	0.5930416447021614	No Hit
GCGTCCGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	461	0.4339558701709466	No Hit
GCGTCCGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	339	0.3191128850064011	No Hit
GCGTCCGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	295	0.27769410347164697	No Hit
GCGTCCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	272	0.2560433767602982	No Hit
GCGTCCGGGCCATCTCATCCCTGAGCCATGATCAAACTCTACGTACTGAGTCGGAG	215	0.20238722795391217	No Hit
GCGTCCGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCCAGCAAGCGC	202	0.1901498606822803	No Hit
GCGTCCGGGATTACCACCCCTGAGACTGCCAAGGCACACAGGGGATAGGCCAAAAA	194	0.18261917313050682	No Hit
GCGTCCGGGGTGAATCTCTCTTCATCTCTAACCATGCCTACTAACCAGAGCTGAAC	192	0.18073650124256346	No Hit
GCGTCCGGGCCATCTCATCCCTGAGCCAGGATCAAACTCTACGTACTGAGTCGGAG	191	0.17979516529859177	No Hit
GCGTCCGGGATTACCACCCCTGAGACTGCCAAGGCACACAGGGGATAGGGCAAAAA	191	0.17979516529859177	No Hit
GCGTCCGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCCTGCCCAGCAAGCGC	181	0.1703818058588749	No Hit
GCGTCCGGGATTACCACCCCTGAGACTGCCAAGGCACACAGGGGATAGGGGAAAAA	172	0.16190978236312975	No Hit
GCGTCCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	155	0.14590707131561112	No Hit
GCGTCCGGGAGTGCAGTGCTGCGTCCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA	152	0.14308306348369607	No Hit
GCGTCCGGGACCCAGCCGGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGG	149	0.140259055651781	No Hit
GCGTCCGGGAAGCAGTGGTATCAACGCAGAGTGCGATCGGAAGAGCTCGTATGCCG	145	0.13649371187589426	Illumina Single End Adapter 2 (95% over 23bp)
GCGTCCGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGG	136	0.1280216883801491	No Hit
GCGTCCGGGGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	130	0.12237367271631899	No Hit
GCGTCCGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCA	129	0.12143233677234733	No Hit
GCGTCCGGGGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAACCAAA	128	0.12049100082837563	No Hit
GCGTCCGGGGAGTGCAGTGCTGCGTCCGGGAAAAAAAAAAAAAAAAAAAAAAAAAA	127	0.11954966488440394	No Hit
GCGTCCGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCAA	124	0.1167256570524889	No Hit
GCGTCCGGGACCTCAGATTATTTTTAAAAAATAAGCCAATAACAAGTTTTGAAGGC	124	0.1167256570524889	No Hit
GCGTCCGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTGTGC	117	0.1101363054446871	No Hit
GCGTCCGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCAAC	113	0.10637096166880035	No Hit
GCGTCCGGGCCATCTCATCCCTGCGTGTCTCCGACTCAGTACGTAGAGTTTGATCA	112	0.10542962572482868	No Hit
GCGTCCGGGGACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCTTGCAAACA	107	0.10072294600497024	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGGC	15	0.008010137	50.61955	37
TGCGATT	15	0.008040543	50.571087	36
ATACAGG	15	0.008040543	50.571087	36
GCCTTTA	20	3.9579323E-4	50.522717	35
ATATGCT	40	2.410161E-9	50.522717	34
TTGCGAT	15	0.008071035	50.522717	35
AGGGCGC	15	0.008071035	50.522717	35
AACAGAA	20	3.9579323E-4	50.522717	35
CATATGC	40	2.4610927E-9	50.402195	33
GTTAAAG	20	4.0048955E-4	50.402195	32
TGCGATC	20	4.0048955E-4	50.402195	32
TTAAAGG	15	0.008147643	50.402195	33
GTGACAC	15	0.008147643	50.402195	32
ATGGAAC	20	4.0143408E-4	50.37816	31
GTGCGAT	20	4.0143408E-4	50.37816	31
GGCCTAA	25	1.9839756E-5	50.37816	31
ATTCGTT	15	0.008209317	50.30619	48
TCAGGGT	20	4.0427837E-4	50.306187	47
AAGATTA	40	2.5029294E-9	50.306187	48
GCACTTG	20	4.0427837E-4	50.306187	48

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content