SRR1526428_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526428_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	135499
Sequences flagged as poor quality	0
Sequence length	56
%GC	53

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
ATCTCTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	1165	0.8597849430623105	No Hit
ATCTCTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	783	0.5778640432770722	No Hit
ATCTCTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	726	0.5357973121572853	No Hit
ATCTCTGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCTG	440	0.32472564373168805	No Hit
ATCTCTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT	408	0.3011092332784744	No Hit
ATCTCTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCCAGCAAGCGC	347	0.2560904508520358	No Hit
ATCTCTGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCT	339	0.2501863482387324	No Hit
ATCTCTGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCTT	297	0.21918980951888944	No Hit
ATCTCTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTCTTCC	291	0.21476173255891187	No Hit
ATCTCTGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGAC	271	0.20000147602565332	No Hit
ATCTCTGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	263	0.19409737341234992	No Hit
ATCTCTGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCT	263	0.19409737341234992	No Hit
ATCTCTGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	242	0.17859910405242843	No Hit
ATCTCTGGGGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAACCAAA	239	0.17638506557243963	No Hit
ATCTCTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCCTGCCCAGCAAGCGC	235	0.17343301426578792	No Hit
ATCTCTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCT	232	0.17121897578579917	No Hit
ATCTCTGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTCC	229	0.16900493730581037	No Hit
ATCTCTGGGGATCCCCTCGACCACTCCTTTGGCGCTTCGCTGTCGACCGTGCGCTT	196	0.14465051402593376	No Hit
ATCTCTGGGCCGGGAAGAGTGGCGTTCCTTCCTGCTCAGCTCAGGGGCGTCCCTCC	189	0.13948442423929328	No Hit
ATCTCTGGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCC	189	0.13948442423929328	No Hit
ATCTCTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGCGCA	172	0.12693820618602353	No Hit
ATCTCTGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGG	165	0.12177211639938301	No Hit
ATCTCTGGGGGGCTGGCGAGATGGCTCTGTGGTTAAGAGTGCCGACTGCTCTTCCG	163	0.12029609074605717	No Hit
ATCTCTGGGATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCAT	158	0.11660602661274252	No Hit
ATCTCTGGGACTTAGAGACCTGGCCGGTGCCCTGCGCGGGGCCTCCCCAGGACACA	156	0.11513000095941667	No Hit
ATCTCTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTTTTCC	150	0.1107019239994391	No Hit
ATCTCTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCCTGCCTAGCAAGCGC	149	0.1099639111727762	No Hit
ATCTCTGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCATGAGA	148	0.10922589834611326	No Hit
ATCTCTGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCA	143	0.10553583421279862	No Hit
ATCTCTGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCTTGCTTCAACAG	138	0.10184577007948399	No Hit
ATCTCTGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCGAGCT	137	0.10110775725282106	No Hit

Adapter Content

Adapter graph

Kmer Content

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATAAA	20	3.913589E-4	50.648365	35
TAAAGGC	45	1.1823431E-10	50.648365	34
GTATAGG	15	0.007996934	50.64836	34
CGCTTAG	15	0.007996934	50.64836	34
ACGCTTA	15	0.008056571	50.553303	33
CGAGTCA	25	1.9508563E-5	50.534336	32
CTGTATA	15	0.008068538	50.534332	32
CGGGTAC	30	9.773503E-7	50.458595	31
GTACGCT	15	0.008116539	50.458595	31
TCTGATA	20	4.0761012E-4	50.23275	49
TAAGGGG	25	2.0212348E-5	50.23275	49
TGCATGC	15	0.008274009	50.21402	47
CGATCCA	20	4.0986712E-4	50.176605	46
ATGTAAG	20	4.1062167E-4	50.157913	39
AGACACG	20	4.1062167E-4	50.157913	39
GATGCAT	15	0.008310669	50.157913	45
CCCTTAC	20	4.1062167E-4	50.157913	39
ATATTCA	15	0.008310669	50.157913	39
GTGCCGA	20	4.1062167E-4	50.157913	39
CCAGATT	25	2.0481632E-5	50.120583	42

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content