SRR1526374_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526374_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	37024
Sequences flagged as poor quality	0
Sequence length	56
%GC	55

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
AAGCGGGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGA	516	1.3936905790838374	No Hit
AAGCGGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGAG	382	1.0317631806395853	No Hit
AAGCGGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	193	0.5212834917891098	No Hit
AAGCGGGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA	190	0.5131806395851339	No Hit
AAGCGGGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATAT	148	0.39974070872947276	No Hit
AAGCGGGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATC	138	0.3727312013828868	No Hit
AAGCGGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCCTGCCCAGCAAGCGC	113	0.3052074330164218	No Hit
AAGCGGGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	107	0.2890017286084702	No Hit
AAGCGGGGGACTGCACTGCGACCCAGCAGGGACTTCGCCTCTTAGTCTCAGCAGCT	106	0.2863007778738116	No Hit
AAGCGGGGAGACCGCACTCGGACCTGCTCCGCTCCTGCACCGCGGCCAAGGAGAGC	94	0.2538893690579084	No Hit
AAGCGGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCCAGCAAGCGC	91	0.24578651685393257	No Hit
AAGCGGGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCAA	87	0.23498271391529818	No Hit
AAGCGGGGGGCAGCCAGTGAATCTCTCTTCATCTCTAACCATGCCTACTAACCAGA	86	0.2322817631806396	No Hit
AAGCGGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	85	0.229580812445981	No Hit
AAGCGGGGGACACCACCCAGGGCCACCTGGCCAGGGGTGACACTGCTCACAACAAA	80	0.216076058772688	No Hit
AAGCGGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	79	0.21337510803802937	No Hit
AAGCGGGGGGAGGCTCTCCGTTTCTCCGAGAACCGGGAAGGACGTTGGTGTAGAGG	79	0.21337510803802937	No Hit
AAGCGGGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCATTCTAATCGC	76	0.2052722558340536	No Hit
AAGCGGGGGAAGATGAAGAGTTAAGTGACCTTAATTAACCTGTTCTGTGCCCCATC	65	0.17556179775280897	No Hit
AAGCGGGGGATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCAT	64	0.17286084701815038	No Hit
AAGCGGGGGCAGTCTGCTGCTGGAACACATACATCGATCTTTATTCTCCACTGATT	64	0.17286084701815038	No Hit
AAGCGGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCCATGG	62	0.1674589455488332	No Hit
AAGCGGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGGGGG	61	0.16475799481417458	No Hit
AAGCGGGGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGC	59	0.15935609334485737	No Hit
AAGCGGGGGCACCGCTTCCTCCTCCTCCTCCTCCTCCTCGCCCGGCCCCAGCTGCC	56	0.1512532411408816	No Hit
AAGCGGGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGG	54	0.14585133967156438	No Hit
AAGCGGGGGGACTCTTGCGCATGCGTGCTGCTGGAAGGCTCTCCGTTTCTCCGAGA	54	0.14585133967156438	No Hit
AAGCGGGGGAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCTTGCAAA	54	0.14585133967156438	No Hit
AAGCGGGGGGCCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTGGCCTTCTC	53	0.1431503889369058	No Hit
AAGCGGGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCCATG	52	0.1404494382022472	No Hit
AAGCGGGGGGGGTGGAAATTATCCTGCCACACAACACTGGCAAAACCTTGTCTACT	51	0.1377484874675886	No Hit
AAGCGGGGGAGCTTTTGGAAAGCTCTTTTTTACATAATAAAAAATATACAGAAAAC	49	0.1323465859982714	No Hit
AAGCGGGGGGGGACGACGTTCGTCATTTGGTGCGGGAGGGAGCGCGAGAGCGGCGG	49	0.1323465859982714	No Hit
AAGCGGGGGTTTAATGCTGGCCTAACTATTACCAAGGCCATGCTGGAGAAATGGCA	48	0.12964563526361278	No Hit
AAGCGGGGGCTCTTCCTGTCTGTATCAGGGCGGCGCGTGGTCCACGCCGAGCGACT	48	0.12964563526361278	No Hit
AAGCGGGGGACGGTGAACTGACCAAGATAAAATATAAGATCAGGAGACAAAAATCT	47	0.1269446845289542	No Hit
AAGCGGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCTTGTGCA	47	0.1269446845289542	No Hit
AAGCGGGGGGGTTCTCCCGGAGGGAATCGTGGGACAGCCAGGGCGTCCCACTCGGA	47	0.1269446845289542	No Hit
AAGCGGGGGGCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGTCCCAAGAAACA	46	0.12424373379429558	No Hit
AAGCGGGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGA	46	0.12424373379429558	No Hit
AAGCGGGGCAAGGGACACCGAAAAGCAGTGTCTTATGCCAAGTTTGTAAGTGGTGA	45	0.12154278305963699	No Hit
AAGCGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCA	43	0.1161408815903198	No Hit
AAGCGGGGGGGACCCAGCAGGGACTTCGCCTCTTAGTCTCAGCAGCTTATCTGCCC	42	0.1134399308556612	No Hit
AAGCGGGGGAGGTATGAATGACAACTGTTTGAGAAGAAGGTCCCAAATCCCTCTCT	42	0.1134399308556612	No Hit
AAGCGGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGGGCGCCTGCCCAGCAAGCGC	41	0.1107389801210026	No Hit
AAGCGGGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCGAGCT	41	0.1107389801210026	No Hit
AAGCGGGGGACCCCTAGCGTCATATGAACTGGGTATATATGTCTGTAGAGAGTCTG	41	0.1107389801210026	No Hit
AAGCGGGGGATGCCATCTACCTTCTTCAACCTCACCATAGCCTTCTCACTATCACT	40	0.108038029386344	No Hit
AAGCGGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCAAC	40	0.108038029386344	No Hit
AAGCGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTT	40	0.108038029386344	No Hit
AAGCGGGGGGCTCTTCGGACTTGGGCTTGGGTTCCGGCGACATGGCTAAACGCACC	39	0.10533707865168539	No Hit
AAGCGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	39	0.10533707865168539	No Hit
AAGCGGGGGGGCCATTACTGCCGGAAAAGGTCCAGCAGAGCTCAGCAGCCAAGATG	39	0.10533707865168539	No Hit
AAGCGGGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAGAAGCA	38	0.1026361279170268	No Hit
AAGCGGGGGTGTGGCCATCAAGATCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	38	0.1026361279170268	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTTTA	15	0.007864721	50.787003	37
TAACTCG	15	0.007864721	50.787003	37
GTGACAC	15	0.007864721	50.787003	37
TCGATCT	15	0.007907898	50.71685	34
TGATTTA	15	0.007907898	50.71685	34
TGCGATT	15	0.007907898	50.71685	36
TAACCTG	15	0.007907898	50.71685	36
TCTAACC	15	0.007907898	50.71685	34
ATTGCGA	15	0.007907898	50.71685	34
GATCTTT	15	0.007907898	50.71685	36
ATTAACC	15	0.007907898	50.71685	34
TAGAGGG	15	0.007907898	50.71685	34
TTGCGAT	15	0.007907898	50.71685	35
TTAACCT	15	0.007907898	50.71685	35
GTAACTC	15	0.007907898	50.71685	36
CGATCTT	15	0.007907898	50.71685	35
AGGGGTG	15	0.007951251	50.6469	33
TTATGCC	15	0.007951251	50.6469	33
AAACCAG	20	3.8762428E-4	50.6469	33
ATCGATC	15	0.007951251	50.6469	33

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content