SRR1526370_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526370_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17953
Sequences flagged as poor quality	0
Sequence length	56
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTTTCGGGGCCGAATAGCCTCTCCACCCAAGCGGCCGGCCAACCTGCGTGCAATC	43	0.23951428730574278	No Hit
CCTTTCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAA	28	0.15596279173397204	No Hit
CCTTTCGGGGATGTTGTCCTGGCTGTTGCCAAAAAAAAACCAAAAAAAAAAAAAAA	21	0.11697209380047903	No Hit
CCTTTCGGGGCCGAATAGCCTCTCCACCCAAGCGGCCGGCGAACCTGCGTGCAATC	21	0.11697209380047903	No Hit
CCTTTCGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGG	20	0.11140199409569432	No Hit
CCTTTCGGGATGTTGTCCTGGCTGTTGCCAAAAAAAAAAAAACCAAAACAAAAAAA	19	0.1058318943909096	No Hit
CCTTTCGGGATGTTGTCCTGGCTGTTGCCAAAAAAAAAACCAAAAAAAAAAAAAAA	18	0.10026179468612488	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTTGCT	15	0.007844801	50.710224	39
TTACTTT	15	0.007844801	50.710224	41
CAACCTG	20	3.7979707E-4	50.710224	41
AGACCCT	20	3.7979707E-4	50.710224	40
GCCAACC	15	0.007844801	50.710224	39
TTTGCTT	15	0.007844801	50.710224	40
CGACCCT	15	0.007844801	50.710224	40
CCGGAGA	15	0.008113586	50.28169	36
CCAACAC	45	1.1459633E-10	50.28169	43
CGGAGAC	15	0.008113586	50.28169	37
TTTTCAT	15	0.008113586	50.28169	36
TTTTTCA	15	0.008113586	50.28169	35
CAACACA	40	2.3155735E-9	50.28169	44
TACTTTT	15	0.008113586	50.28169	42
CGATCCT	15	0.008113586	50.28169	36
GTGCAAT	50	5.456968E-12	50.0	49
GCGTGCA	55	0.0	50.0	47
GCCAGGA	25	2.0052737E-5	50.0	15
CGTGCAA	50	5.456968E-12	50.0	48
CTTTTGA	15	0.008296542	49.999996	30