SRR1526346_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526346_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	51821
Sequences flagged as poor quality	0
Sequence length	56
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGCACCGGGGCCGAATAGCCTCTCCACCCAAGCGGCCGGCCAACCTGCGTGCAATC	112	0.21612859651492636	No Hit
CGCACCGGGGATGAGATGGACTTAAAGGAATTGACGGGTCCGCACAGTTCTGAGTC	104	0.2006908396210031	No Hit
CGCACCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAA	103	0.19876112000926266	No Hit
CGCACCGGGGATGAGATGGACTTAAATGAATTGACGGGTCCGCACAGTTCTGAGTC	87	0.16788560622141602	No Hit
CGCACCGGGGATGAGATGGACTCAAAGGAATTGACGGGTCCGCACAGTTCTGAGTC	85	0.1640261669979352	No Hit
CGCACCGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAA	76	0.14665869049227145	No Hit
CGCACCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAACGATTAAG	65	0.12543177476312692	No Hit
CGCACCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCCTGTCTCAAAGATTAAG	58	0.11192373748094402	No Hit
CGCACCGGGGATGAGATGGACTCAAATGAATTGACGGGTCCGCACAGTTCTGAGTC	52	0.10034541981050155	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCCACC	15	0.008000013	50.598236	38
AACAACC	25	1.9193181E-5	50.598232	38
CAACCTG	20	3.928741E-4	50.548576	41
CAACCAC	20	3.928741E-4	50.548576	40
TACTTTT	15	0.008031167	50.548576	39
CTATCAA	15	0.008031167	50.548576	41
TACAAAC	20	3.9862574E-4	50.400196	37
AAACCCA	20	4.044441E-4	50.25268	36
TATGCTC	15	0.008251777	50.203705	35
CATCACT	15	0.008251777	50.203705	44
TCAGACT	15	0.008251777	50.203705	35
CACCACA	15	0.008251777	50.203705	44
GTGCGTA	25	2.0105088E-5	50.203705	44
GTGCGCA	15	0.008251777	50.203705	44
CGATTCA	15	0.008251777	50.203705	49
CCACACA	20	4.0639847E-4	50.2037	44
CTGCAAT	20	4.0639847E-4	50.2037	49
CCCACAC	15	0.008283657	50.15482	43
CCACCAC	15	0.008283657	50.15482	43
TCAAAAC	25	2.0221558E-5	50.15482	43