SRR1526341_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526341_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25275
Sequences flagged as poor quality	0
Sequence length	56
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAA	112	0.4431256181998021	No Hit
GCTGTGGGGGCTGCTGTGGGGAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAA	52	0.20573689416419388	No Hit
GCTGTGGGGGAGTGCAGTGCTGCTGTGGGGAAAAAAAAACCAAAAAAAAAAAAAAA	44	0.17408506429277942	No Hit
GCTGTGGGGGTGCTGCTGAGCACCTTTCTGGGATGTTGTCCTGGCTGTTGCCAAAA	43	0.1701285855588526	No Hit
GCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAA	41	0.16221562809099901	No Hit
GCTGTGGGGTGCTGCTGAGCACCTTTCTGGGATGTTGTCCTGGCTGTTGCCAAAAA	39	0.1543026706231454	No Hit
GCTGTGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCCCTTGCCTAGCAAGCGC	39	0.1543026706231454	No Hit
GCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAA	38	0.15034619188921858	No Hit
GCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAACAAAAAAA	30	0.11869436201780414	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTCTAA	15	0.0080211805	50.487953	41
GGACCAA	15	0.0080211805	50.487953	40
CTGTAGC	15	0.0080211805	50.487953	41
CAAAACC	20	3.9913115E-4	50.286	34
TAGCGCC	20	4.0310132E-4	50.18563	44
CAAAAGA	15	0.008214463	50.18563	44
GCGCCGG	25	2.0326012E-5	49.986084	46
CCAACAC	45	1.2551027E-10	49.98608	43
CACATTC	15	0.008345229	49.98608	24
CATTCCA	15	0.008345229	49.98608	26
ACACATT	15	0.008345229	49.98608	23
ACATTCC	15	0.008345229	49.98608	25
GACACAT	15	0.008345229	49.98608	22
GCCGGAA	15	0.008345229	49.98608	48
TTCCATC	15	0.008345229	49.98608	28
CCATCCC	15	0.008345229	49.98608	30
CTCAGCA	15	0.008345229	49.98608	25
TGTAGCG	15	0.008345229	49.98608	42
ATTCCAT	15	0.008345229	49.98608	27
GTAGCGC	15	0.008345229	49.98608	43