SRR1526340_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526340_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	31330
Sequences flagged as poor quality	0
Sequence length	56
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCGGGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCCCCCGACTGCTCTTCC	70	0.22342802425789976	No Hit
TCGGGTGGGGATCCCCTCGACCACTCCTTTGGCGCTTCGCTGTCGACCGTGCGCTT	55	0.17555059048834984	No Hit
TCGGGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	54	0.17235876157037983	No Hit
TCGGGTGGGGCTCTTTTCCTCTGGCGCGCCACCGACGATCCTATTGTCATCATGGG	47	0.15001595914458987	No Hit
TCGGGTGGGGATCCCCTCGACCACTCCTTTGGCGCTTCGCTGTCGACCCTGCGCTT	44	0.14044047239067986	No Hit
TCGGGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	41	0.13086498563676985	No Hit
TCGGGTGGGGATCCCCTCGACCACTCCTTTGGCGCTTCGCCGTCGACCGTGCGCTT	39	0.12448132780082986	No Hit
TCGGGTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCCCTTGCCTAGCAAGCGC	35	0.11171401212894988	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCACC	15	0.007817972	50.845024	38
GCACCCA	20	3.7929713E-4	50.845024	39
TTTCATT	20	3.8237037E-4	50.762215	37
TGCTTGC	15	0.007868634	50.762215	37
ACCCACT	15	0.007868634	50.762215	41
TTTTCAT	25	1.901661E-5	50.597404	36
TAAGCCC	15	0.007970687	50.5974	36
TCCTTCT	20	4.0444176E-4	50.190018	42
CCAAAAC	30	9.887954E-7	50.190014	43
CTTCTCT	15	0.008282761	50.109325	44
GGCTCTT	50	7.2759576E-12	49.948723	9
CGGTTGT	25	2.053127E-5	49.948723	11
CCCCAGA	25	2.053127E-5	49.948723	14
ACAGTGG	15	0.008388777	49.94872	10
GAAGTTC	15	0.008388777	49.94872	9
GAGCTGT	15	0.008388777	49.94872	9
AAGCAGT	15	0.008388777	49.94872	10
CCCAGAG	20	4.1420528E-4	49.948715	15
ATGGGCC	15	0.008442163	49.8688	50
ATTGGAG	15	0.008442163	49.8688	29