SRR1526339_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526339_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	36589
Sequences flagged as poor quality	0
Sequence length	56
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TGAAGCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAACGATTAAG	215	0.5876082975757742	No Hit
TGAAGCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCCTGTCTCAAAGATTAAG	211	0.5766760501790156	No Hit
TGAAGCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTCGTCTCAAAGATTAAG	161	0.44002295771953315	No Hit
TGAAGCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	152	0.41542540107682635	No Hit
TGAAGCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCCCGTCTCAAAGATTAAG	135	0.3689633496406024	No Hit
TGAAGCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGCCTCAACGATTAAG	99	0.27057312306977505	No Hit
TGAAGCGGGGATGAGATGGACTCAAAGGAATTGACGGGTCCGCACAGTTCTGAGTC	81	0.22137800978436142	No Hit
TGAAGCGGGGATGAGATGGACTCAAATGAATTGACGGGTCCGCACAGTTCTGAGTC	69	0.18858126759408567	No Hit
TGAAGCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCCTGCCTCAAAGATTAAG	67	0.18311514389570638	No Hit
TGAAGCGGGGATGAGATGGACTTAAAGGAATTGACGGGTCCGCACAGTTCTGAGTC	63	0.17218289649894777	No Hit
TGAAGCGGGGCCGAATAGCCTCTCCACCCAAGCGGCCGGCCAACCTGCGTGCAATC	49	0.1339200306102927	No Hit
TGAAGCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTCAG	46	0.12572084506272377	No Hit
TGAAGCGGGGATGAGATGGACTCAAAGGAATTGACGGGTACGCACAGTTCTGAGTC	40	0.10932247396758588	No Hit
TGAAGCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGCCTCAAAGATTAAG	38	0.10385635026920659	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGCCC	25	1.9030818E-5	50.619778	39
ACGCCCA	30	9.3647395E-7	50.619774	40
CGCCCAC	20	3.8859944E-4	50.619774	41
CCTGTCT	30	9.3647395E-7	50.619774	39
CCGCACA	45	1.1459633E-10	50.619774	40
TCGTCTC	15	0.00796748	50.619774	40
GGCCAAC	15	0.00796748	50.619774	38
CTGTCTC	30	9.3647395E-7	50.619774	40
GCCTCAA	45	1.1641532E-10	50.479164	42
GCCCACT	20	3.9398507E-4	50.479164	42
ACCGACT	20	3.9398507E-4	50.479164	42
TGCTTGC	40	2.3810571E-9	50.409157	37
AGGCCGC	20	3.9670005E-4	50.409157	37
AAACCAC	15	0.0081001595	50.409153	37
TGCCCGT	35	4.7830326E-8	50.409153	37
TGCTCGT	15	0.0081001595	50.409153	37
CCTCAAC	35	4.8357833E-8	50.339336	43
ATTTTAT	25	1.9668898E-5	50.339336	44
CCAAAAC	45	1.200533E-10	50.339333	43
CTCCACG	20	3.9942987E-4	50.339333	44