SRR1526338_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526338_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	81551
Sequences flagged as poor quality	0
Sequence length	56
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAGTTGGGGCCGAATAGCCTCTCCACCCAAGCGGCCGGCCAACCTGCGTGCAATC	125	0.15327831663621536	No Hit
AAAGTTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCCCCCGACTGCTCTTCC	124	0.15205209010312565	No Hit
AAAGTTGGGATGAGATGGACTTAAAGGAATTGACGGGTACGCCCAGTTCTGAGTCG	118	0.14469473090458732	No Hit
AAAGTTGGGATGAGATGGACTTAAAGGAATTGACGGGTACCCACAGTTCTGAGTCG	110	0.13488491863986954	No Hit
AAAGTTGGGATGAGATGGACTTAAATGAATTGACGGGTACGCCCAGTTCTGAGTCG	104	0.1275275594413312	No Hit
AAAGTTGGGATGAGATGGACTTAAATGAATTGACGGGTACGCACAGTTCTGAGTCG	102	0.12507510637515176	No Hit
AAAGTTGGGATGAGATGGACTTAAATGAATTGACGGGTACCCACAGTTCTGAGTCG	97	0.11894397370970312	No Hit
AAAGTTGGGATGAGATGGACTTAAAGGAATTGACGGGTACGCACAGTTCTGAGTCG	88	0.10790793491189564	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCCCA	80	0.0	50.418736	39
CTGACCA	15	0.008130303	50.418736	39
CCCACGT	15	0.008130303	50.418736	39
TACGCCC	80	0.0	50.418736	38
GCCAACC	15	0.008130303	50.418736	39
CTGAGAT	15	0.0081702825	50.35626	41
TGGCCTT	15	0.0081702825	50.35626	37
AAACCGC	15	0.0081702825	50.35626	37
GTACGCC	90	0.0	50.35626	37
GAGTCCG	15	0.008230527	50.262833	36
ATACCCA	15	0.008230527	50.262833	36
CCGAAAC	20	4.1167377E-4	50.107895	43
CCAATAC	15	0.008331668	50.10789	43
CCAACAC	90	0.0	50.10789	43
CATGACT	15	0.008352007	50.07702	44
ATTATAT	20	4.1292905E-4	50.07702	44
TCTGATA	15	0.008372382	50.046185	48
GCCCAAA	15	0.008372382	50.046185	48
AATCAAT	15	0.008372382	50.046185	49
CAAAAAG	15	0.008372382	50.046185	49