SRR1526336_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526336_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	48149
Sequences flagged as poor quality	0
Sequence length	56
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCGGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCCCCCGACTGCTCTTCC	169	0.3509937901098673	No Hit
GTCGGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	136	0.28245654115350266	No Hit
GTCGGTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCCCTTGCCTAGCAAGCGC	86	0.1786122245529502	No Hit
GTCGGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTCCTCTTCC	76	0.15784336123283974	No Hit
GTCGGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	71	0.14745892957278448	No Hit
GTCGGTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	61	0.12669006625267398	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCACTA	15	0.007902427	50.749733	39
AGCACCG	15	0.007902427	50.749733	39
GCACCGA	15	0.007902427	50.749733	40
CTGCACT	15	0.007902427	50.749733	38
GATACCC	15	0.008137226	50.37579	35
TAAGATC	20	3.9929216E-4	50.37579	35
ATACCCA	15	0.008137226	50.37579	36
TCGACCC	15	0.008205255	50.26996	43
ACCATGT	15	0.008205255	50.26996	42
TCGCCTA	15	0.008205255	50.26996	42
CCTGATT	15	0.008239427	50.21721	49
TCCGACG	15	0.008239427	50.21721	49
CTCAAAG	15	0.008239427	50.21721	44
CAATAGC	15	0.008273705	50.16457	45
TCAAAGA	15	0.008273705	50.16457	45
ATAGCAG	15	0.008273705	50.16457	47
AATAGCA	15	0.008273705	50.16457	46
ATGTTCC	15	0.008273705	50.16457	45
CGCGCCG	15	0.008273705	50.16457	47
CTACCAA	25	2.0176443E-5	50.164566	46