SRR1526324_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526324_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	39604
Sequences flagged as poor quality	0
Sequence length	56
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per sequence GC content graph$

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGCGAGGGGGGGGCTGGAGAGATGGCTCAGTGGTTAGGACCACTGACTGCTCTTCG	102	0.2575497424502575	No Hit
AGCGAGGGGGGGGCTGGAGAGATGGCTCAGTGGTTAGGAGCACTGACTGCTCTTCG	95	0.23987476012523987	No Hit
AGCGAGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCCCTTGCCTAGCAAGCGC	66	0.16664983335016667	No Hit
AGCGAGGGGGGGGCTGGAGAGATGGCTCAGTGGTTAGGAGCACCGACTCCTCTTCG	51	0.12877487122512876	No Hit
AGCGAGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	49	0.12372487627512373	No Hit
AGCGAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCCCCCGACTGCTCTTCC	47	0.11867488132511868	No Hit
AGCGAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	41	0.10352489647510353	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAGTCG	15	0.008140559	50.35414	39
ACGCACC	15	0.008140559	50.35414	38
AACAGTC	15	0.008140559	50.35414	38
CCCCCAA	15	0.008140559	50.35414	40
AACAAAC	15	0.008181703	50.290077	37
CACCGTT	15	0.008181703	50.290077	41
GAACAGT	15	0.008181703	50.290077	37
CTATTGT	15	0.008181703	50.290077	41
TAGGACC	25	1.9965739E-5	50.226177	35
TCGAACA	20	4.04339E-4	50.226177	35
CGAACAG	20	4.04339E-4	50.226177	36
CTCGAAC	20	4.1202045E-4	50.035446	34
CAATGTG	15	0.008347827	50.035446	15
CCAACAC	20	4.1202045E-4	50.035446	43
GAGTGAC	15	0.008347827	50.035446	10
ACCAATG	15	0.008347827	50.035446	13
TATTTTC	25	2.0421616E-5	50.035446	43
TTAGGAC	20	4.1202045E-4	50.035446	34
ATTTTCT	30	1.0171789E-6	50.035446	44
GACCAAT	15	0.008347827	50.035446	12