SRR1526287_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526287_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	32636
Sequences flagged as poor quality	0
Sequence length	56
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
ATTCCAGGGATGAGATGGACTTAAAGGAATTGACGGGTACCCACAGTTCTGAGTCG	328	1.0050251256281406	No Hit
ATTCCAGGGATGAGATGGACTTAAAGGAATTGACGGGTACGCCCAGTTCTGAGTCG	325	0.9958328226498345	No Hit
ATTCCAGGGATGAGATGGACTTAAATGAATTGACGGGTACCCACAGTTCTGAGTCG	319	0.9774482166932222	No Hit
ATTCCAGGGATGAGATGGACTTAAAGGAATTGACGGGTACGCACAGTTCTGAGTCG	288	0.8824610859173918	No Hit
ATTCCAGGGATGAGATGGACTTAAATGAATTGACGGGTACGCCCAGTTCTGAGTCG	277	0.848755974996936	No Hit
ATTCCAGGGATGAGATGGACTTAAATGAATTGACGGGTACGCACAGTTCTGAGTCG	243	0.7445765412427994	No Hit
ATTCCAGGGATGAGATGGACTCAAAGGAATTGACGGGTACGCCCAGTTCTGAGTCG	183	0.560730481676676	No Hit
ATTCCAGGGATGAGATGGACTCAAATGAATTGACGGGTACGCCCAGTTCTGAGTCG	178	0.5454099767128325	No Hit
ATTCCAGGGATGAGATGGACTCAAAGGAATTGACGGGTACCCACAGTTCTGAGTCG	172	0.5270253707562201	No Hit
ATTCCAGGGATGAGATGGACTCAAATGAATTGACGGGTACCCACAGTTCTGAGTCG	170	0.5208971687706827	No Hit
ATTCCAGGGATGAGATGGACTCAAATGAATTGACGGGTACGCACAGTTCTGAGTCG	148	0.45348694692977076	No Hit
ATTCCAGGGATGAGATGGACTCAAAGGAATTGACGGGTACGCACAGTTCTGAGTCG	143	0.4381664419659272	No Hit
ATTCCAGGGATGCGCTGGACTTAAAGGAATTGACGGGTCCGCCCAGTTCTGAGTCG	128	0.3922049270743964	No Hit
ATTCCAGGGATGCGCTGGACTTAAATGAATTGACGGGTCCGCCCAGTTCTGAGTCG	119	0.36462801813947787	No Hit
ATTCCAGGGATGCGCTGGACTCAAATGAATTGACGGGTCCGCCCAGTTCTGAGTCG	67	0.20529476651550432	No Hit
ATTCCAGGGATGCGCTGGACTCAAAGGAATTGACGGGTCCGCCCAGTTCTGAGTCG	67	0.20529476651550432	No Hit
ATTCCAGGGATGCGCTGGACTTAAATGAATTGACGGGTACGCCCAGTTCTGAGTCG	50	0.15320504963843606	No Hit
ATTCCAGGGATGCGCTGGACTTAAAGGAATTGACGGGTACGCCCAGTTCTGAGTCG	42	0.12869224169628632	No Hit
ATTCCAGGGATGAGATGGACTTAAAGGAATTGACGGGTACACACAGTTCTGAGTCG	42	0.12869224169628632	No Hit
ATTCCAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAA	39	0.11949993871798015	No Hit
ATTCCAGGGATGCGCTGGACTCAAAGGAATTGACGGGTACGCCCAGTTCTGAGTCG	39	0.11949993871798015	No Hit
ATTCCAGGGATGAGATGGACTTAAATGAATTGACGGGTACTCACAGTTCTGAGTCG	38	0.11643583772521142	No Hit
ATTCCAGGGATGAGATGGACTTAAATGAATTGACGGGTAACCACAGTTCTGAGTCG	38	0.11643583772521142	No Hit
ATTCCAGGGATGAGATGGACTTAAAGGAATTGACGGGTAACCACAGTTCTGAGTCG	36	0.11030763573967398	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAAACC	30	9.4206916E-7	50.551403	38
GCCCAGC	45	1.1459633E-10	50.551403	41
CAACCTG	15	0.0080024665	50.551403	41
CAACCAA	15	0.0080024665	50.551403	40
ACCAACC	15	0.0080024665	50.551403	38
CAACAAA	25	1.913756E-5	50.551403	40
TACGCCC	230	0.0	50.551403	38
TACGTCC	15	0.0080024665	50.551403	38
CCTTAAA	15	0.0080024665	50.551403	40
TCCGCCC	95	0.0	50.551403	38
GACCAGC	15	0.0080024665	50.551403	41
CGACCAG	25	1.913756E-5	50.551403	40
CGTCCAG	15	0.0080024665	50.551403	40
CCAACAA	20	3.9057387E-4	50.5514	39
ACGCCAA	20	3.9057387E-4	50.5514	39
AGCCATA	20	3.9057387E-4	50.5514	38
CGCCAAG	20	3.9057387E-4	50.5514	40
TACGACC	20	3.9057387E-4	50.5514	38
CATAGAA	20	3.9057387E-4	50.5514	41
CCATAGA	20	3.9057387E-4	50.5514	40

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content