Basic Statistics
Measure | Value |
---|---|
Filename | SRR1526255_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 125966 |
Sequences flagged as poor quality | 0 |
Sequence length | 56 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATACAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC | 543 | 0.43106870107806866 | No Hit |
ATACAGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG | 408 | 0.32389692456694663 | No Hit |
ATACAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCCCCCGACTGCTCTTCC | 398 | 0.3159582744550117 | No Hit |
ATACAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC | 397 | 0.3151644094438182 | No Hit |
ATACAGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC | 161 | 0.12781226680215296 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGCACGG | 15 | 0.008132153 | 50.432022 | 37 |
GTAAGCG | 15 | 0.008171034 | 50.371235 | 35 |
GGTAAGC | 15 | 0.008262293 | 50.22997 | 34 |
TTGTGAC | 15 | 0.0082753915 | 50.209854 | 47 |
TGCAATA | 15 | 0.0082753915 | 50.209854 | 47 |
CGATTAA | 30 | 1.0135009E-6 | 50.18975 | 49 |
AATGCAA | 15 | 0.008301635 | 50.16967 | 45 |
GCCCCGT | 15 | 0.008447085 | 49.949802 | 11 |
AGTCCAA | 15 | 0.008447085 | 49.949802 | 11 |
GTCTACG | 30 | 1.0475942E-6 | 49.949802 | 10 |
TACGCTT | 15 | 0.008447085 | 49.949802 | 12 |
GTCGTTC | 15 | 0.008447085 | 49.949802 | 11 |
CATACAC | 15 | 0.008447085 | 49.949802 | 12 |
GAGGCAT | 15 | 0.008447085 | 49.949802 | 10 |
AGCTTAT | 20 | 4.1902656E-4 | 49.9498 | 11 |
TTAAGCC | 20 | 4.1902656E-4 | 49.9498 | 13 |
GAGAGTA | 25 | 2.0940684E-5 | 49.92991 | 9 |
GAAGTTT | 15 | 0.008460401 | 49.92991 | 9 |
GATTACG | 15 | 0.008460401 | 49.92991 | 9 |
GACAGTA | 20 | 4.1985148E-4 | 49.929905 | 9 |