SRR1526249_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526249_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	53237
Sequences flagged as poor quality	0
Sequence length	56
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGCTTGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	888	1.668012848207074	No Hit
CGCTTGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTCGTCTCAAAGATTAAG	234	0.439543926216729	No Hit
CGCTTGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAACGATTAAG	220	0.41324642635760844	No Hit
CGCTTGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCCTGTCTCAAAGATTAAG	174	0.3268403553919267	No Hit
CGCTTGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	144	0.27048856997952553	No Hit
CGCTTGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	61	0.11458196367188235	No Hit
CGCTTGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAACGATTCAG	60	0.11270357082480228	No Hit
CGCTTGGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	54	0.10143321374232207	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCACGGG	15	0.007967448	50.652298	40
CGTCTCA	25	1.9079092E-5	50.652298	41
TGCTCGT	20	3.9830673E-4	50.41087	37
ATGCTCG	20	4.0018733E-4	50.36286	36
TAGCGCC	15	0.008211866	50.267113	44
ACTGTCT	15	0.008211866	50.267113	43
CCAAAAC	30	9.916348E-7	50.267113	43
CAAAAAC	15	0.008211866	50.267113	43
CAGTTCT	25	1.9962536E-5	50.26711	44
ACAGTTC	25	1.9962536E-5	50.26711	43
TGTAGCG	15	0.0082428055	50.21937	42
ACGATTC	15	0.0082428055	50.21937	48
ATATGCC	30	1.0047461E-6	50.171726	34
TTCTAGC	15	0.008273832	50.171726	34
GATTCAG	15	0.008398807	49.982044	50
TTATCCG	15	0.008430269	49.934845	13
GCGCGGA	15	0.008430269	49.934845	30
ATGGACT	25	2.0763096E-5	49.934845	15
CGTCCTT	15	0.008430269	49.934845	27
TCGTCCT	15	0.008461819	49.887737	26