SRR1526236_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526236_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	63836
Sequences flagged as poor quality	0
Sequence length	56
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGCAGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	475	0.7440942414938279	No Hit
CGGCAGGGGTGAGATGGACTTAAAGGAATTGACGGGTACGCACAGTTCTGAGTCGG	225	0.35246569333918165	No Hit
CGGCAGGGGTGAGATGGACTTAAATGAATTGACGGGTACGCACAGTTCTGAGTCGG	216	0.3383670656056144	No Hit
CGGCAGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTCGTCTCAAAGATTAAG	142	0.22244501535183908	No Hit
CGGCAGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCCTGTCTCAAAGATTAAG	116	0.1817156463437559	No Hit
CGGCAGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAACGATTAAG	115	0.1801491321511373	No Hit
CGGCAGGGGTGAGATGGACTCAAAGGAATTGACGGGTACGCACAGTTCTGAGTCGG	114	0.1785826179585187	No Hit
CGGCAGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	86	0.1347202205651983	No Hit
CGGCAGGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	78	0.12218810702424965	No Hit
CGGCAGGGGTGAGATGGACTCAAATGAATTGACGGGTACGCACAGTTCTGAGTCGG	77	0.12062159283163106	No Hit
CGGCAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCCCCCGACTGCTCTTCC	70	0.10965599348330096	No Hit
CGGCAGGGGCAGTGGCCTGAACTTTGAAACCAGCAGCCCCAAATCCTGCAGCAGAG	67	0.1049564509054452	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCACCGT	25	1.9555344E-5	50.461845	40
CGCACCG	25	1.9555344E-5	50.461845	39
ACCACTG	15	0.008094655	50.46184	39
GCGGTCT	20	3.9849634E-4	50.421764	37
TATGCTC	15	0.008120148	50.42176	35
TTATTCC	15	0.008120148	50.42176	35
TAAGACC	25	1.964766E-5	50.42176	35
ATGCTTG	60	0.0	50.42176	36
TATTCCC	15	0.008120148	50.42176	36
CGATCCT	15	0.008120148	50.42176	36
GACGATC	15	0.00822272	50.262074	34
GTTATTC	15	0.00822272	50.262074	34
CATTTAT	20	4.1116722E-4	50.103397	45
TTGATAT	20	4.1116722E-4	50.103397	49
TTTGATA	20	4.1116722E-4	50.103397	48
GTTCGCC	15	0.008326251	50.103394	48
TTCGGCG	25	2.0494881E-5	50.06388	33
CGTTATT	15	0.008352284	50.063877	33
ACCGTTC	30	1.023096E-6	50.063877	42
GCATATG	90	0.0	50.024433	32