SRR1526224_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526224_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	254773
Sequences flagged as poor quality	0
Sequence length	56
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTATTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	1028	0.40349644585572253	No Hit
CGTATTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	975	0.38269361353047615	No Hit
CGTATTGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	951	0.3732734630435721	No Hit
CGTATTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCCCCCGACTGCTCTTCC	682	0.26768927633618944	No Hit
CGTATTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	623	0.24453140638921708	No Hit
CGTATTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT	293	0.11500433719428668	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATTGT	30	1.009581E-6	50.247868	44
GTAAGCC	15	0.008260387	50.247868	35
AACGATT	50	7.2759576E-12	50.16835	47
ACGAAAC	15	0.008312274	50.168346	48
CAACGAT	50	7.2759576E-12	50.138596	46
AAGCTAT	25	2.0998508E-5	49.931286	10
ATCATCG	15	0.008469389	49.931282	10
ACGAATC	15	0.008469389	49.931282	10
GTAGCGA	15	0.00848258	49.91163	29
ACTAGAT	20	4.2471607E-4	49.833168	18
TCTGTTA	15	0.008542133	49.82338	21
GGATACG	20	4.2677944E-4	49.78426	8
TAGATAC	20	4.2677944E-4	49.78426	20
GGGTAAT	15	0.0085687	49.784256	8
CGTATTA	85	0.0	49.774483	1
GTATTAG	85	0.0	49.774483	2
CGTATTG	25865	0.0	48.78342	1
GTATTGG	25725	0.0	48.77803	2
TATTGGG	24985	0.0	48.768433	3
ATTGGGA	8855	0.0	48.73459	4