Basic Statistics
Measure | Value |
---|---|
Filename | SRR1526197_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26211 |
Sequences flagged as poor quality | 0 |
Sequence length | 56 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATGGCGGGGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 47 | 0.179314028461333 | No Hit |
ATGGCGGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 37 | 0.14116210751211322 | No Hit |
ATGGCGGGGACACGCAGGGATGAGATGGCCAAAAAAAAAACAAAAAAAAAAAAAAA | 30 | 0.11445576284765938 | No Hit |
ATGGCGGGGACACGCAGGGATGAGATGGCCAAAAAAAAAAAAAAAAAAAAAAAAAA | 27 | 0.10301018656289344 | No Hit |
ATGGCGGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 27 | 0.10301018656289344 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTGGCA | 15 | 0.008026634 | 50.484497 | 38 |
TCGTCTG | 20 | 3.954577E-4 | 50.38685 | 35 |
CCAAAAC | 20 | 3.9926107E-4 | 50.289577 | 43 |
GCAGCAT | 15 | 0.008213223 | 50.192677 | 42 |
ACATGGT | 30 | 1.0357726E-6 | 49.808792 | 11 |
AGCAGTT | 15 | 0.008467004 | 49.808792 | 11 |
AGAGTGT | 15 | 0.008467004 | 49.808792 | 11 |
GCGGGAT | 15 | 0.008531351 | 49.71374 | 4 |
GCGGGAA | 65 | 0.0 | 49.71374 | 4 |
GGGTCTT | 30 | 1.049586E-6 | 49.71374 | 8 |
GGGTTTC | 15 | 0.008531351 | 49.71374 | 8 |
GGGTCGA | 15 | 0.008531351 | 49.71374 | 8 |
GACAGTG | 15 | 0.008531351 | 49.71374 | 9 |
GAGTGGT | 20 | 4.2269618E-4 | 49.71374 | 9 |
CGGGGTC | 20 | 4.2269618E-4 | 49.71374 | 5 |
GGGTACA | 20 | 4.2269618E-4 | 49.71374 | 7 |
GAAGAGT | 15 | 0.008531351 | 49.71374 | 9 |
GAACTGG | 20 | 4.2269618E-4 | 49.71374 | 9 |
GAACCCC | 15 | 0.008531351 | 49.71374 | 9 |
CGGGATC | 15 | 0.008531351 | 49.71374 | 5 |