SRR1526190_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526190_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	57940
Sequences flagged as poor quality	0
Sequence length	56
%GC	52

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CTGAAAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	760	1.3117017604418364	No Hit
CTGAAAGGGCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAC	210	0.3624439074905074	No Hit
CTGAAAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAACGATTAAG	193	0.33310321021746636	No Hit
CTGAAAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTCGTCTCAAAGATTAAG	193	0.33310321021746636	No Hit
CTGAAAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCCTGTCTCAAAGATTAAG	186	0.32102174663444943	No Hit
CTGAAAGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	179	0.3089402830514325	No Hit
CTGAAAGGGAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCC	170	0.2934069727304108	No Hit
CTGAAAGGGGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTC	144	0.24853296513634793	No Hit
CTGAAAGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCCATG	137	0.23645150155333106	No Hit
CTGAAAGGGGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAA	133	0.22954780807732136	No Hit
CTGAAAGGGTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGA	96	0.16568864342423195	No Hit
CTGAAAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	94	0.16223679668622712	No Hit
CTGAAAGGGATCAAAACCAACCCGGTGAGCTCCCTCCCGGCTCCGGCCGGGGGTCG	89	0.15360717984121505	No Hit
CTGAAAGGGAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTC	83	0.14325163962720056	No Hit
CTGAAAGGGTCTCCTACTTGGATAACTGTGGTAATTCTAGCGCTAATACATGCCGA	81	0.13979979288919572	No Hit
CTGAAAGGGGGGCCGATCGCACGCCCCCCGTGGCGGCGACCACCCATTCGAACGTC	81	0.13979979288919572	No Hit
CTGAAAGGGCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCG	79	0.1363479461511909	No Hit
CTGAAAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCCCCCGACTGCTCTTCC	79	0.1363479461511909	No Hit
CTGAAAGGGCTCCTACTTGGATAACTGTGGTAATTCTAGCGCTAATACATGCCGAC	78	0.1346220227821885	No Hit
CTGAAAGGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCGCGTCTC	77	0.13289609941318606	No Hit
CTGAAAGGGGGCGGCGACGACCCATTCGAACGTCTGCCCTCTCAACTTTCGATGGT	76	0.13117017604418363	No Hit
CTGAAAGGGAACTGTGGTAATTCTAGAGCTAATACATGCCCACGGGCGCTGACCCC	72	0.12426648256817396	No Hit
CTGAAAGGGGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGT	71	0.12254055919917156	No Hit
CTGAAAGGGGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAAT	70	0.12081463583016915	No Hit
CTGAAAGGGAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTG	68	0.11736278909216431	No Hit
CTGAAAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	66	0.11391094235415947	No Hit
CTGAAAGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCGAGCT	65	0.11218501898515706	No Hit
CTGAAAGGGCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAA	65	0.11218501898515706	No Hit
CTGAAAGGGCTCCTACTTGGATAACTGTGGTAATTCTAGACCTAATACATGCCGAC	60	0.10355540214014498	No Hit
CTGAAAGGGGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGT	60	0.10355540214014498	No Hit
CTGAAAGGGCTCCTACTTGGATAACTGTGGTAATTCTAGCCCTAATACATGCCGAC	60	0.10355540214014498	No Hit
CTGAAAGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCCCTTGCCTAGCAAGCGC	58	0.10010355540214014	No Hit
CTGAAAGGGGCTTCTTTCCGGTTTCCGCGGCAGCCGCAGCCATGAGCAGCAAAGTC	58	0.10010355540214014	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCAACT	15	0.008181361	50.320244	41
CCATCGC	15	0.008181361	50.320244	40
CATCGCA	15	0.008181361	50.320244	41
CTCTACT	15	0.008181361	50.320244	41
CTAGAAA	15	0.008266449	50.18886	49
TAGAGCA	25	2.017087E-5	50.18886	36
GACGCCC	15	0.008266449	50.18886	36
ATGCCTG	50	7.2759576E-12	50.18886	36
CGCCCCT	25	2.017087E-5	50.18886	37
CTCAACG	85	0.0	50.188858	44
CGATTCA	40	2.5211193E-9	50.188858	49
TGCTCGT	20	4.0740398E-4	50.188858	37
ATGCCCA	20	4.0740398E-4	50.188858	36
CATGCCC	25	2.0275156E-5	50.145218	35
TATGCCT	50	7.2759576E-12	50.145218	35
TTATTCC	20	4.0915943E-4	50.145214	35
CAACGAT	85	0.0	50.10165	46
TAGAAAC	15	0.00832354	50.10165	50
CACGATT	15	0.00832354	50.10165	47
TTTCATC	15	0.00832354	50.10165	46

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content