SRR1526178_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526178_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18885
Sequences flagged as poor quality	0
Sequence length	56
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CCTTTCGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCT	504	2.66878474980143	No Hit
CCTTTCGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	335	1.7738946253640455	No Hit
CCTTTCGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGCATTGAACAAAAACTC	121	0.6407201482658195	No Hit
CCTTTCGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTCCAATCCGCCCAATCT	107	0.5665872385491131	No Hit
CCTTTCGGGAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCC	62	0.3283028858882711	No Hit
CCTTTCGGGGGGCGCTGACCCCCCTTCCCGGGGGGGGATGCGTGCATTTATCAGAT	53	0.28064601535610273	No Hit
CCTTTCGGGGGTGAGCTCCCTCCCGGCTCCGGCCGGGGGTCGGGCGCCGGCGGCTT	50	0.2647603918453799	No Hit
CCTTTCGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCTC	49	0.25946518400847235	No Hit
CCTTTCGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAAAAA	48	0.2541699761715647	No Hit
CCTTTCGGGGTCTGTCCGTCCGTGGAGCCAGTCCTAGCCACATTATTGACAGTCTT	43	0.22769393698702675	No Hit
CCTTTCGGGGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCAT	43	0.22769393698702675	No Hit
CCTTTCGGGGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATG	42	0.22239872915011916	No Hit
CCTTTCGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGCTCAATCCGCCCAATCT	40	0.21180831347630394	No Hit
CCTTTCGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGACCAAAAACTC	39	0.20651310563939632	No Hit
CCTTTCGGGGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAA	34	0.18003706645485837	No Hit
CCTTTCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	32	0.16944665078104318	No Hit
CCTTTCGGGATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGG	30	0.15885623510722796	No Hit
CCTTTCGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCCGATTGAACAAAAACTC	30	0.15885623510722796	No Hit
CCTTTCGGGGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAG	29	0.15356102727032034	No Hit
CCTTTCGGGTCACAGATCCTCTGAAGGAGATTGGGCGGATTGAACAAAAACTCATC	27	0.14297061159650515	No Hit
CCTTTCGGGACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGG	26	0.13767540375959755	No Hit
CCTTTCGGGCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAC	26	0.13767540375959755	No Hit
CCTTTCGGGAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTG	26	0.13767540375959755	No Hit
CCTTTCGGGATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGT	25	0.13238019592268996	No Hit
CCTTTCGGGAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTG	25	0.13238019592268996	No Hit
CCTTTCGGGGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTC	24	0.12708498808578236	No Hit
CCTTTCGGGACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGAT	21	0.11119936457505958	No Hit
CCTTTCGGGGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCC	20	0.10590415673815197	No Hit
CCTTTCGGGGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGC	19	0.10060894890124437	No Hit
CCTTTCGGGTCCCCCCTCCTCTTCTGAGATGAGTTTTTGTTCCCTCCGCCCAATCT	19	0.10060894890124437	No Hit
CCTTTCGGGAACTGTGGTAATTCTAGAGCTAATACATGCCCACGGGCGCTGACCCC	19	0.10060894890124437	No Hit
CCTTTCGGGAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAG	19	0.10060894890124437	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTTCC	30	9.134892E-7	50.60647	37
CATTGAA	35	4.4752596E-8	50.60647	41
GGCGCAT	30	9.134892E-7	50.60647	37
GTTCCCT	15	0.007915314	50.60647	39
GTTCCAT	15	0.007915314	50.60647	39
TGTTCCC	15	0.007915314	50.60647	38
TGTTCCA	15	0.007915314	50.60647	38
TTCTCAA	15	0.007915314	50.60647	38
GCGCATT	30	9.134892E-7	50.60647	38
TGGGCCG	15	0.007915314	50.60647	35
CGCATTG	35	4.4752596E-8	50.60647	39
GCCGATT	15	0.007915314	50.60647	38
GCATTGA	35	4.4752596E-8	50.60647	40
TCTCAAT	15	0.007915314	50.60647	39
CCGATTG	15	0.007915314	50.60647	39
CGATTGA	15	0.007915314	50.60647	40
TTGGGCC	15	0.008086023	50.335117	34
CCCGGTT	25	2.0253136E-5	49.933514	19
CATCCGC	25	2.0253136E-5	49.933514	43
GTATCAA	25	2.0253136E-5	49.933514	18

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content