SRR1526174_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526174_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23753
Sequences flagged as poor quality	0
Sequence length	56
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CAACAAGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCT	587	2.4712667873531764	No Hit
CAACAAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	438	1.8439776028291162	No Hit
CAACAAGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	320	1.3471982486422767	No Hit
CAACAAGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTCCAATCCGCCCAATCT	155	0.6525491516861028	No Hit
CAACAAGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGCATTGAACAAAAACTC	142	0.5978192228350103	No Hit
CAACAAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTCGTCTCAAAGATTAAG	109	0.45888940344377555	No Hit
CAACAAGGGGGGCGCTGACCCCCCTTCCCGGGGGGGGATGCGTGCATTTATCAGAT	71	0.29890961141750516	No Hit
CAACAAGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAAAAA	61	0.256809666147434	No Hit
CAACAAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCCTGTCTCAAAGATTAAG	58	0.24417968256641265	No Hit
CAACAAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCCAAGATTAAG	58	0.24417968256641265	No Hit
CAACAAGGGAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCC	50	0.21049972635035574	No Hit
CAACAAGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCCGATTGAACAAAAACTC	48	0.20207973729634154	No Hit
CAACAAGGGATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGT	47	0.1978697427693344	No Hit
CAACAAGGGGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAA	40	0.16839978108028458	No Hit
CAACAAGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGCTCAATCCGCCCAATCT	39	0.16418978655327748	No Hit
CAACAAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCCACGATTAAG	36	0.15155980297225613	No Hit
CAACAAGGGAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTC	36	0.15155980297225613	No Hit
CAACAAGGGGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCAT	35	0.14734980844524903	No Hit
CAACAAGGGGGTGAGCTCCCTCCCGGCTCCGGCCGGGGGTCGGGCGCCGGCGGCTT	35	0.14734980844524903	No Hit
CAACAAGGGCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAC	33	0.1389298193912348	No Hit
CAACAAGGGAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTG	32	0.13471982486422768	No Hit
CAACAAGGGATCAGATCAAAACCAACCCGGTGAGCTCCCTCCCGGCTCCGGCCGGG	32	0.13471982486422768	No Hit
CAACAAGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGACCAAAAACTC	32	0.13471982486422768	No Hit
CAACAAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCCGTCTTCTGCTTGGATC	30	0.12629983581021345	No Hit
CAACAAGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCTC	29	0.12208984128320632	No Hit
CAACAAGGGTCACAGATCCTCTGAAGGAGATTGGGCGGATTGAACAAAAACTCATC	28	0.11787984675619921	No Hit
CAACAAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	28	0.11787984675619921	No Hit
CAACAAGGGTCACAGATCCTCTCCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	26	0.10945985770218498	No Hit
CAACAAGGGAACTGTGGTAATTCTAGAGCTAATACATGCCCACGGGCGCTGACCCC	25	0.10524986317517787	No Hit
CAACAAGGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATC	24	0.10103986864817077	No Hit
CAACAAGGGGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTC	24	0.10103986864817077	No Hit
CAACAAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	24	0.10103986864817077	No Hit
CAACAAGGGGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATG	24	0.10103986864817077	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTCCA	20	3.8341625E-4	50.682404	37
TTGTTCC	20	3.8341625E-4	50.682404	37
GTTCCCT	20	3.8341625E-4	50.682404	39
TGCCTGT	15	0.007893854	50.682404	37
TCCAATC	20	3.8341625E-4	50.682404	40
CTGTCTC	15	0.007893854	50.682404	40
GCCTGTC	15	0.007893854	50.682404	38
GGCGCAT	65	0.0	50.6824	37
ATGCCTG	15	0.007961243	50.57388	36
TTTGCTC	15	0.007961243	50.57388	36
TGTCTCC	20	3.875112E-4	50.573875	41
TTTGTCC	20	3.875112E-4	50.573875	36
TATGCCT	15	0.00802906	50.465813	35
ATATGCC	20	3.9580528E-4	50.358208	34
TCCCAAT	15	0.008235092	50.144375	48
CCCTCCG	20	4.0423987E-4	50.144375	42
GGGCCCT	15	0.008235092	50.144375	33
TCCAAGA	20	4.0851036E-4	50.038136	45
CTCTGAA	20	4.1281662E-4	49.93235	19
CCTATCA	15	0.008374614	49.93235	20

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content