SRR1526146_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526146_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	41452
Sequences flagged as poor quality	0
Sequence length	56
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTTGCCGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCT	456	1.1000675480073339	No Hit
GTTGCCGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	435	1.049406542506996	No Hit
GTTGCCGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGCATTGAACAAAAACTC	147	0.35462703850236416	No Hit
GTTGCCGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTCCAATCCGCCCAATCT	94	0.22676831033484512	No Hit
GTTGCCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	91	0.2195310238347969	No Hit
GTTGCCGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAAAAA	80	0.19299430666795328	No Hit
GTTGCCGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCTC	76	0.18334459133455563	No Hit
GTTGCCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	73	0.17610730483450737	No Hit
GTTGCCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	63	0.15198301650101323	No Hit
GTTGCCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	61	0.1471581588343144	No Hit
GTTGCCGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	50	0.12062144166747081	No Hit
GTTGCCGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCCGATTGAACAAAAACTC	49	0.1182090128341214	No Hit
GTTGCCGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATAT	49	0.1182090128341214	No Hit
GTTGCCGTCTTCTGCTTGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGGATCG	46	0.11097172633407315	Illumina Single End Adapter 2 (97% over 34bp)
GTTGCCGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCTGCTG	46	0.11097172633407315	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATTGAC	20	3.9606474E-4	50.442005	41
CCAATCC	35	4.7801223E-8	50.441998	41
CGCTCTT	15	0.008205087	50.257908	47
CCGCTCT	15	0.008205087	50.257908	46
ACCAACA	15	0.008205087	50.257908	42
CAACACA	30	9.875221E-7	50.257908	44
TTGACCA	20	4.032926E-4	50.257908	43
ATTGACC	20	4.032926E-4	50.257908	42
AACACAA	25	1.990696E-5	50.257908	45
CCCCGCT	15	0.00828442	50.135925	11
GCGCATT	20	4.0816911E-4	50.135925	38
CGCATTG	15	0.00828442	50.135925	39
CGACTGA	25	2.0196061E-5	50.135925	40
GGCGCAT	20	4.106249E-4	50.07515	37
GGGCGCA	25	2.0341911E-5	50.07515	36
GGCTCTC	20	4.1309238E-4	50.01453	9
GGTTGCC	15	0.008364323	50.014526	9
GTCAAAG	15	0.008364323	50.014526	9
CCCGATC	15	0.008404488	49.954052	49
GCCCGAT	15	0.008404488	49.954052	48