SRR1526126_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526126_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	61895
Sequences flagged as poor quality	0
Sequence length	56
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
TGCAATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	1964	3.173115760562242	No Hit
TGCAATGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCT	828	1.3377494143307214	No Hit
TGCAATGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	586	0.9467646821229501	No Hit
TGCAATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTCGTCTCAAAGATTAAG	470	0.7593505129655062	No Hit
TGCAATGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGCATTGAACAAAAACTC	274	0.4426851926649972	No Hit
TGCAATGGGGGGCGCTGACCCCCCTTCCCGGGGGGGGATGCGTGCATTTATCAGAT	246	0.39744728976492444	No Hit
TGCAATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCCTGTCTCAAAGATTAAG	232	0.37482833831488815	No Hit
TGCAATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCCAAGATTAAG	231	0.3732126989255998	No Hit
TGCAATGGGAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCC	203	0.3279747960255271	No Hit
TGCAATGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTCCAATCCGCCCAATCT	172	0.27788997495758944	No Hit
TGCAATGGGCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAC	162	0.26173358106470634	No Hit
TGCAATGGGAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTC	155	0.2504241053396882	No Hit
TGCAATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCCACGATTAAG	148	0.23911462961466998	No Hit
TGCAATGGGGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAA	138	0.22295823572178688	No Hit
TGCAATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCCGTCTTCTGCTTGGATC	111	0.1793359722110025	No Hit
TGCAATGGGGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCAT	108	0.17448905404313758	No Hit
TGCAATGGGGGTGAGCTCCCTCCCGGCTCCGGCCGGGGGTCGGGCGCCGGCGGCTT	100	0.16156393892883109	No Hit
TGCAATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	99	0.15994829953954276	No Hit
TGCAATGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCTC	98	0.15833266015025446	No Hit
TGCAATGGGGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATG	96	0.15510138137167784	No Hit
TGCAATGGGAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTG	95	0.15348574198238954	No Hit
TGCAATGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAAAAA	94	0.1518701025931012	No Hit
TGCAATGGGATCAGATCAAAACCAACCCGGTGAGCTCCCTCCCGGCTCCGGCCGGG	92	0.1486388238145246	No Hit
TGCAATGGGATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGT	88	0.14217626625737137	No Hit
TGCAATGGGAACTGTGGTAATTCTAGAGCTAATACATGCCCACGGGCGCTGACCCC	80	0.12925115114306485	No Hit
TGCAATGGGATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGG	76	0.12278859358591163	No Hit
TGCAATGGGAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGA	74	0.11955731480733499	No Hit
TGCAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	69	0.11147911786089344	No Hit
TGCAATGGGGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGC	69	0.11147911786089344	No Hit
TGCAATGGGGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTC	69	0.11147911786089344	No Hit
TGCAATGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGACCAAAAACTC	68	0.10986347847160513	No Hit
TGCAATGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCCGATTGAACAAAAACTC	68	0.10986347847160513	No Hit
TGCAATGGGGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAG	68	0.10986347847160513	No Hit
TGCAATGGGACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGG	65	0.1050165603037402	No Hit
TGCAATGGGGCTTGCAATGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAA	64	0.1034009209144519	No Hit
TGCAATGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCC	63	0.10178528152516358	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTGAA	15	0.008030825	50.561115	41
CGGAATA	15	0.008030825	50.561115	41
TTGTATC	15	0.008083097	50.4783	40
TGTTTAA	15	0.008083097	50.4783	38
GTATTGA	15	0.008083097	50.4783	40
GCGCTTG	20	3.96204E-4	50.4783	38
TCGTCTC	35	4.8054062E-8	50.4783	40
AGACCTA	15	0.008083097	50.4783	38
ACCTAAT	15	0.008083097	50.4783	40
GACCTAA	15	0.008083097	50.4783	39
GCATTGA	45	1.200533E-10	50.478294	40
CTTCATC	15	0.0081093265	50.43699	37
AGCGCTT	20	3.9781033E-4	50.43699	37
TAGACCT	15	0.0081093265	50.43699	37
GGCGCAT	45	1.2187229E-10	50.436985	37
TATGCTC	50	5.456968E-12	50.31347	35
ACACTGC	15	0.008188398	50.31347	35
GCGGATC	15	0.008188398	50.31347	35
CTCCACG	15	0.008268041	50.190556	44
TCCACGA	15	0.008268041	50.190556	45

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content