SRR1526118_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1526118_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	70670
Sequences flagged as poor quality	0
Sequence length	56
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

$Per base quality graph$

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
TATTGTGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	2189	3.0974954011603226	No Hit
TATTGTGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCT	1394	1.9725484646950615	No Hit
TATTGTGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	1226	1.734823829064667	No Hit
TATTGTGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTCGTCTCAAAGATTAAG	529	0.748549596717136	No Hit
TATTGTGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGCATTGAACAAAAACTC	404	0.571671147587378	No Hit
TATTGTGGGTACCTGGTTGATCCTGCCAGTAGCATATGCCTGTCTCAAAGATTAAG	266	0.3763973397481251	No Hit
TATTGTGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTCCAATCCGCCCAATCT	260	0.3679071741898967	No Hit
TATTGTGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCCAAGATTAAG	227	0.3212112636196406	No Hit
TATTGTGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCTC	221	0.3127210980614122	No Hit
TATTGTGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCCACGATTAAG	167	0.23630960803735673	No Hit
TATTGTGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAAAAA	153	0.21649922173482386	No Hit
TATTGTGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCCGATTGAACAAAAACTC	140	0.19810386302532898	No Hit
TATTGTGGGGGGCGCTGACCCCCCTTCCCGGGGGGGGATGCGTGCATTTATCAGAT	132	0.18678364228102448	No Hit
TATTGTGGGAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCC	120	0.1698033111645677	No Hit
TATTGTGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGACCAAAAACTC	119	0.16838828357152966	No Hit
TATTGTGGGTCACAGATCCTCTGAAGGAGATTGGGCGGATTGAACAAAAACTCATC	105	0.14857789726899676	No Hit
TATTGTGGGAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTC	98	0.1386727041177303	No Hit
TATTGTGGGGGTGAGCTCCCTCCCGGCTCCGGCCGGGGGTCGGGCGCCGGCGGCTT	92	0.13018253855950193	No Hit
TATTGTGGGCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAC	92	0.13018253855950193	No Hit
TATTGTGGGTACCTGGTTGATCCTGCCAGTAGCATATGCCGTCTTCTGCTTGGATC	85	0.12027734540823547	No Hit
TATTGTGGGTCACAGATCCTCTCCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	81	0.11461723503608322	No Hit
TATTGTGGGAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTG	76	0.10754209707089289	No Hit
TATTGTGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGCTCAATCCGCCCAATCT	75	0.10612706947785483	No Hit
TATTGTGGGGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAA	71	0.10046695910570255	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAATCC	15	0.007994815	50.626083	41
CGTCTCA	70	0.0	50.626083	41
TCAATTC	15	0.007994815	50.626083	41
AATTATA	15	0.007994815	50.626083	41
GATTGAC	30	9.485757E-7	50.626083	41
TGTTTAA	20	3.965013E-4	50.480602	38
CTCAATC	20	3.965013E-4	50.480602	40
CCGATTG	30	9.676314E-7	50.480602	39
CGATTGA	25	1.953411E-5	50.480602	40
GCCGATT	35	4.816684E-8	50.480602	38
TGTTCCC	20	3.965013E-4	50.480602	38
TGTTCCA	30	9.676314E-7	50.480602	38
GTTCCCT	25	1.953411E-5	50.480602	39
GCTCCAT	15	0.008086371	50.480602	39
GCTCAAT	20	3.965013E-4	50.480602	39
ATGCTCG	60	0.0	50.40818	36
TCGGCCG	15	0.008132441	50.40818	36
TTGTTCG	15	0.008132441	50.40818	37
GATCGGC	15	0.008201911	50.29993	34
ATTCGCC	15	0.008225165	50.26395	44

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content