FastQCFastQC Report
Fri 17 Jun 2016
SRR1526112_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1526112_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences141
Sequences flagged as poor quality0
Sequence length40
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGGAGGGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTT21.4184397163120568No Hit
GCAGGAGGGGATATATAAAATTTAGTTCCCCTCTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGTCTCATTTTTTTTTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGGCTTTTCTCCCTCCCCGCCCCCCTCCCCGG10.7092198581560284No Hit
GCAGGAGGGCTGGTCAGTCGCTTTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGAAGTCAACCCAGAGTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGAGCCCCATTTTTTTTTTTTTTTTTTTTTTCA10.7092198581560284No Hit
GCAGGAGGGCAACGAAAAGACACCCACCCACCCCACCCTC10.7092198581560284No Hit
GCAGGAGGGAGTCGCCTTTTTTTTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGAAGCCTGGTATCACCCCCGAGTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGATGAGATGGACTTAAAGGAATTGCCGGGCAC10.7092198581560284No Hit
GCAGGAGGGCATGGTATCAACGCAAAAAAACAACAAACAA10.7092198581560284No Hit
GCAGGAGGGCATTACAAACCACCCCCGCCCTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGAGAAACATAGTATCACCGCAGCGTCGCCTTTTT10.7092198581560284No Hit
GCAGGAGGGGCTGTCACCCCAGAGTCGATTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGTGGGGGGAGACAAAGAGGGGGATTGTACCC10.7092198581560284No Hit
GCAGGAGGGGCTAAGAACCCCTGCCCTTTGTCCTGTCTCT10.7092198581560284No Hit
GCAGGAGGGGAAGCTGTCCAACCCCGAGCCGACTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGTAGCTAAGCCTTTTGCTTTCCTCCCCTCTC10.7092198581560284No Hit
GCAGGAAGGGCCTCTTTTTTTTTTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGATCTGCTTNTGCCCGTTCCGCCCGAGAGTG10.7092198581560284No Hit
GCAGGAAAAACCAGAACAACAATCTAACACAAAAAACGAA10.7092198581560284No Hit
GCAGGAGGGAGCATGGTCTCCCCCCGAGCCGCCTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGTTCCAGAGTCCTTTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGGGCCATGAACCCCCGAGCCGACCTTTTTTT10.7092198581560284No Hit
GCAGGAGGGAAGCAGCGTTCAACCCCGAGCCTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGAAGCAGTTCAAAAACAAATTCTATTTTCCC10.7092198581560284No Hit
GCAGGAGGGATTTTTTCCTGATTTTTAAAGAGGTAGGTGG10.7092198581560284No Hit
GCAGGAGGGAACCATCATGTGTTTCTGTAGAATCCGATGT10.7092198581560284No Hit
GCAGGAGGGTGGCCCGAGTCGCCTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGAGTGGTACGCACGTCGCCAAACACCCAACAC10.7092198581560284No Hit
GCAGGAGGGCCGTCGTTTTTTTTTTTTTTTTTTTTTTTTC10.7092198581560284No Hit
GCAGGAGGGATGAGATGCCCTTCCACCAATTCCCGGCTCC10.7092198581560284No Hit
GCAGGAGGGCGACACCCAGGGATGAGCTGCCCCACACACC10.7092198581560284No Hit
GCAGGAGGGGGGAGGCGGAGCGCGAGCGCCACCCCGGCGG10.7092198581560284No Hit
GCAGGAGGGACTTTTTTTTTCTCCACTCTTAATTTGCCTT10.7092198581560284No Hit
GCAGGAGGGATTGTGTTGGTTCCAGGATGGAACTGAGGCT10.7092198581560284No Hit
GCAGGAGGGGGCTGCCGGCGGGAAGCAGCTATCAACNCCG10.7092198581560284No Hit
GCAGGAGGGAAGCATGGTCCAACCCAGAGTCGCCTTTTTT10.7092198581560284No Hit
GCAGGAGGGGCGAGCGATTTTTTATGGTTTTTTTGGTTTT10.7092198581560284No Hit
GCAGGAGGGGGAAGACGTGGGACCCGATGGCCCCCCTGCG10.7092198581560284No Hit
GCAGGAGGGTCCTGTCAACCCCGAGCCGCCTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTCTC10.7092198581560284No Hit
GCAGGAGGGAAGCCTGATATCACCCCCGCGTCGCCTTTTT10.7092198581560284No Hit
GCAGGAGGGAGCTTTGCTCTTTTTTTAACCCCCTCCCTCT10.7092198581560284No Hit
GCAGGAGGGAAGAGTGGATCAACCCAGAGTCGATTTTTTT10.7092198581560284No Hit
GCAGGAGCGATGACTCTTCCTAACCACGCGAGCAATCAGG10.7092198581560284No Hit
GCAGGAGGGAAGCTGGATCACCCAGCTCGCCTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGATGAGATGGACTTAAATGAATTGACGGGTAC10.7092198581560284No Hit
GCAGGAGGGAATTATTTACCCTCACTTACTATTTCACGCC10.7092198581560284No Hit
GCAGGAGGGGGTCCATCCTTTTTTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGCTGTCAACCGCCCCTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGCCATTACACAACTAAAACACTTTTTTTTAATCT10.7092198581560284No Hit
GCAGGAGGGTGTACAACCAGAGTTGACTTTTTTTTCTTTT10.7092198581560284No Hit
GCAGGAGGGGGAAATTACCCTTGTGATTGGGTCAGAATTG10.7092198581560284No Hit
GCAGGAGGGTAGCGATGGGAGGAATCCCGGGACCGCCCAC10.7092198581560284No Hit
GCAGGAGGGTCCCCCAGCGCGCTTTTCCTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGANGGCCGCAGTGAGTTGTTCCATGGAGACACTGTG10.7092198581560284No Hit
GCAGGACGGGGATCTTGGTGCACTGGAATCTCGTACAACT10.7092198581560284No Hit
GCAGGAGGGGATACAAGTATGGCTATGAACTTCCTGTGGA10.7092198581560284No Hit
GCAGGAGGGACATTACACGCAGACCCCCCTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGAACAGTGGTACCGCCCACCCGAGACCCGAAG10.7092198581560284No Hit
GCAGGAGGGTATCGAGAGTCCCTTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGATGGTATCCACGCACAAACACACCACACCAA10.7092198581560284No Hit
GCAGGAGGGCTTCAACACCGAGTCCCCTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGCCCTTTTTATTTTATCCATTACCTTTTCTT10.7092198581560284No Hit
GCAGGAGCTGCCTGCCCCGCTGTCCGGAGAGCGGGTGAGC10.7092198581560284No Hit
GCAGGAGGGATGAGATGGACTTAAATGAATTGCCGGGCAC10.7092198581560284No Hit
GCAGGAGGGGAGTCCCCTCTTTTTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGCTGCAGGAGGTGTCCCCAGCGTCGCCTTTT10.7092198581560284No Hit
GCAGGAGGGAAGCAGTGGTATCAACCCCAAAAAAAAACAA10.7092198581560284No Hit
GCAGGAGGGACGCATGGTACACCCCGCGTCGACTTTTTTT10.7092198581560284No Hit
GCAGGAGGGATGAGCAGGTGCTACAGAAGAGGTTCTAGGG10.7092198581560284No Hit
GCAGGAGGGCAACCCGATTTTTTTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGACGTGCTCCCCCAGAGTCCATTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGAAGCTACAACCCCGTCCCTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGCGTCCCCTTTTTTTTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGCATGATACCCCCGAGTCGCCTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGTCGACTTTTTTTTTTTTTTTTTTTTTTTGGG10.7092198581560284No Hit
GCAGGAGGGGTGTCGACCGTGCGCTTCTTCTAGCCCCGTG10.7092198581560284No Hit
GCAGGAGGGGCTCTCCGCCCCCCCCCGCCGCCCCTAGCTC10.7092198581560284No Hit
GCAGGAGGGCCGTGGTTCCACCCCGAGCCGATTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGCCCCACCCCCGACAACATCCCCCCACCGCGC10.7092198581560284No Hit
GCAGGAGGGGAAGCACTGTCTCCCCCCCTCGCCCCCTCTC10.7092198581560284No Hit
GCAGGAGGGCTTTTTTCATGCTTTTTCACGCGGCCGGTGG10.7092198581560284No Hit
GCAGGAGGGGGGGTGGCCACACCCCCCAGGCCGGGCGGCA10.7092198581560284No Hit
GCAGGAGGGTGGTTCGCAGATCCATTTCTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGTGGATCACCCGACTCACCTTTCTTCTTTTTT10.7092198581560284No Hit
GCAGGAGGGGGACTGTAATCCCAATTAAAACCACATGTAT10.7092198581560284No Hit
GCAGGAGGGCTCTTGACTTTTTTTTTTTTTTTTTTTTTCC10.7092198581560284No Hit
GCAGGAGGGGCTGGACGCTTCCTGGAGGAGGCCGCCCGGG10.7092198581560284No Hit
GCAGGAGGGAGGGGCCATACCACTCGAGGGGGCTACTGAG10.7092198581560284No Hit
GCAGGAGGGAAGCTCCCCCAGAGCCCCCTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGGAAGAAACCATAGTTCATTTTGTGGACACT10.7092198581560284No Hit
GCAGGAGGGGGGGGGCTTAGCCCCCCCGGGAGTTCCCCCC10.7092198581560284No Hit
GCAGGAGGGAGGGCACATCGCCTTTTCTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGCCACTATTTAACCCAAGATGGCCTTGCACTT10.7092198581560284No Hit
GCAGGAGGGGACATGGTACCCACAGCCGACTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGAGCTTTAGCTTGAATGCTGACCTAGCTGGA10.7092198581560284No Hit
GCAGGAGGGAAACAAAAACCGAAACACCTCCTCCTTCTTT10.7092198581560284No Hit
GCAGGAGGGTAACACTATAACACCCTCCCTCCCACCCTGC10.7092198581560284No Hit
GCAGGAGGGGATGGTTCAACGTAGCGCCGATTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGTTCGCTTTTTTTTTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGATTTTTCCTTTTTTTCATTGTTAAATTGACT10.7092198581560284No Hit
GCAGGAGGGAAGCATGGTTCAACCCAGCGTCGCCTTTTTT10.7092198581560284No Hit
GCAGGAGGGGCGCTGACCATATCTTATTTTTCTAACCCAA10.7092198581560284No Hit
GCAGGAGGGAAGTATCAACGCAGAGCCGCCTTTTTTTTCC10.7092198581560284No Hit
GCAGGAGGGGGCGTCATTTGCCCTTTTCCCCCCCCTTATC10.7092198581560284No Hit
GCAGGAGGGGCGTCGCCTTTTTTTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGCTCGTCTTAATCAGCCCCATCTTTTGGATCC10.7092198581560284No Hit
GCAGGAGGGTGGCACGAGCCGACTTTCTCTCTTTTTTCTT10.7092198581560284No Hit
GCAGGAGGGTTCACGCAGAGTCCACCTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGAATGTTAATTTAACTAACTTGCCTTTTTTAG10.7092198581560284No Hit
GCAGGAGGGGCGTGCTTCCTTGGCCTTCCCCGCTCTCCAG10.7092198581560284No Hit
GCAGGAGGATTCGCGCTGCCGTCTGGGTTTCCCCCCTTTT10.7092198581560284No Hit
GCAGGAGGGAAGCATGAACAACCCCGCCCCGCCTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGTGCAGTGCTGCCGGAGGGCCTGTCTACCGC10.7092198581560284No Hit
GCAGGAGGGGAGTAAGTCCCAATTTAGTGTGGATACTCCA10.7092198581560284No Hit
GCAGGAGGGAAGCATGGTATCAACCCAGCCTCTTTCTTTT10.7092198581560284No Hit
GCAGGANGGGCACAAGGGAAACCACAAAATTATTACATAT10.7092198581560284No Hit
GCAGGAGGGCTTTTTTTTTTTTCTTTTTTTTTTTCTCCCC10.7092198581560284No Hit
GCAGGAGGGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGAAGCATGGTATCCACGCAGCGTCCCCCTTT10.7092198581560284No Hit
GCAGGAGGGGAAGATAGTGAGTTGCCGGTCCCTGCCCTGC10.7092198581560284No Hit
GCAGGAGGGATTGGGAACTGGTGGAGACCAAATTTTGAAC10.7092198581560284No Hit
GCAGGAGGGAGTGTCAACCAGAGTCCCCTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGTACAGTGCTGAAGACAGGAGACGCACCGAT10.7092198581560284No Hit
GCAGGANGGCCTAATCCTAGCCCCAGCCCTACACAAATAT10.7092198581560284No Hit
GCAGGAGGGAGTATCACCCCGAGCCCACTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGAAGCTGGTTAACGCCGATCGACTTTTTCCTT10.7092198581560284No Hit
GCAGGAGGGGCCCCGATCCTTCCCCACCCCCCCCCCCCCC10.7092198581560284No Hit
GCAGGAGGGATGAGATGGACTTAAATGAATTCCCGGATAC10.7092198581560284No Hit
GCAGGAGGGATGGTATAGAGTCGACCTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGTCCCGCCGCCTCGACTTTTTTTTTTTTTTAA10.7092198581560284No Hit
GCAGGAGGGGAAGCATGGCTCACCCAGAGCCCACTTTTTT10.7092198581560284No Hit
GCAGGAGGGGTCTCCCTGTTTTCTTTTTTCCCTTTGCACT10.7092198581560284No Hit
GCAGGAGGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGAAGATGGTCCACCAGAGTCACCTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGGAGTCAACCAGCGTCCCCTTTTTTTTTTTTT10.7092198581560284No Hit
GCAGGAGGGATGAGATGGACTTCACGGACTTGACGGGTAC10.7092198581560284No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCAGGAG100.034.01
CAGGAGG100.034.02
AGGAGGG100.034.03