SRR1525954_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1525954_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13535
Sequences flagged as poor quality	0
Sequence length	56
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCCCGGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCT	53	0.3915773919468046	No Hit
GTCCCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	42	0.31030661248614705	No Hit
GTCCCGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	41	0.30291835980790544	No Hit
GTCCCGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	33	0.2438123383819727	No Hit
GTCCCGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	28	0.20687107499076468	No Hit
GTCCCGGGGGACAGGATCAACCATAGGAAAGAAGATTCCTGAGCCGGGCATGGTGA	27	0.19948282231252307	No Hit
GTCCCGGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	24	0.1773180642777983	No Hit
GTCCCGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	22	0.1625415589213151	No Hit
GTCCCGGGGGGGCGCTGACCCCCCTTCCCGGGGGGGGATGCGTGCATTTATCAGAT	21	0.15515330624307352	No Hit
GTCCCGGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTCTTTTTTTTTTTTTTT	19	0.14037680088659032	No Hit
GTCCCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCCCCCGACTGCTCTTCC	19	0.14037680088659032	No Hit
GTCCCGGGGCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAC	17	0.12560029553010713	No Hit
GTCCCGGGGGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAA	16	0.11821204285186553	No Hit
GTCCCGGGGGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGC	15	0.11082379017362395	No Hit
GTCCCGGGGAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCC	15	0.11082379017362395	No Hit
GTCCCGGGGGTTCTTTGGGATATAGCATTCTTCTCATGGTCACATGTACTGTGTAT	15	0.11082379017362395	No Hit
GTCCCGGGGGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTC	14	0.10343553749538234	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCCGC	20	3.89142E-4	50.37079	43
CAATCCG	20	3.89142E-4	50.37079	42
TCCGCCC	20	3.89142E-4	50.37079	45
ATCCGCC	20	3.89142E-4	50.37079	44
CACTGTC	15	0.008013309	50.370785	42
CACATCC	15	0.008133274	50.18284	13
CATCCTC	15	0.008133274	50.18284	15
ACATCCT	15	0.008133274	50.18284	14
GCAGTGG	20	3.9644205E-4	50.18284	12
AGAGCCC	15	0.008133274	50.18284	36
GGGCCCC	15	0.008133274	50.18284	9
CCGCCCA	25	1.9358307E-5	50.182835	46
AGCAGTG	25	1.9358307E-5	50.182835	11
AAGAGCC	20	4.0385048E-4	49.996284	35
GCCCAAT	15	0.00825457	49.99628	48
CCCAATC	15	0.00825457	49.99628	49
TCAACGC	20	4.113685E-4	49.811115	21
GGGAGCT	20	4.113685E-4	49.811115	8
GGGATCA	20	4.113685E-4	49.811115	7
CAACGCA	20	4.113685E-4	49.811115	22