FastQCFastQC Report
Fri 17 Jun 2016
SRR1525912_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1525912_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences188
Sequences flagged as poor quality0
Sequence length40
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCATGGGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTT21.0638297872340425No Hit
CTCCATGGGGTCTGGTGTTCACCCTGTTTCTCATAGCCTC21.0638297872340425No Hit
CTCCATGGGTGGATCCGCCTTTTTTTTTTTTTTTTTTTTC10.5319148936170213No Hit
CTCCATGGGAGTCGACCCTTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGGCATTTGGGTAAAAGCCCCACGGAGTAGCA10.5319148936170213No Hit
CTCCATGGGAGTCGACTTTTTTTTTTTTTTTTTTTTCTTT10.5319148936170213No Hit
CTCCATGGGCGAGCGGCCCCCGCGCCCACTTTTTCTTTTC10.5319148936170213No Hit
CTCCATGGGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGCATGGTGACATTTGATTGATGTTTACCAGTG10.5319148936170213No Hit
CTCCATGGGACGCAGTGGTATCAACCTGTTTGGTTTTTTT10.5319148936170213No Hit
CTCCATGGGGTTCGTAGACCTGGAACCCAACCTCCCCCTT10.5319148936170213No Hit
CTCCATGGGTGTTTTACCCCACTTACAACCTTCCGGCCAG10.5319148936170213No Hit
CTCCATGGCCCACCCCCAGGCCACCCCCCCAACCCCACAC10.5319148936170213No Hit
CTCCATGGGCAGCTGCTACCCGCAGACTCGGCTTTTTTTT10.5319148936170213No Hit
CTCCATGGGAAGCATGGTACAACCCCGCGTTGCACCAACC10.5319148936170213No Hit
CTCCATGCCCCAACACTACCACCACCCACCCCACCCCCCC10.5319148936170213No Hit
CTCCATGGGGCATCCCCCCCCCCTCCACTCCCCTCCCTCT10.5319148936170213No Hit
CTCCATGGGATTTCACCCCCCCCCCCCCCTCTTCTTTTTT10.5319148936170213No Hit
CTCCATGGGACTGGTATCCACCAGAGTCGAGTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGACAGTGTTCACGCCGCGCCCCCTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGCCATGGCTCACCCCGACTCGACTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGAAGCATGGTTCACCCCCGCCTCCCCCTTTTT10.5319148936170213No Hit
CTCCATGGGTGCTCCCCATCTGTTACAAAGACAAATCATT10.5319148936170213No Hit
CTCCATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAACAAA10.5319148936170213No Hit
CTCCATGGGTGATAACCGAGCCAAAAAAAAAACAAAAAAA10.5319148936170213No Hit
CTCCATGGGACTTTTTTTTTTTTTTTTTTTTTTTTCCCCT10.5319148936170213No Hit
CTCCATGGGAGTCTTTCCTACTTTATTCTCTGCGCCAGGT10.5319148936170213No Hit
CTCCATGGGGTGGGTAGGACCACCCATTCCAGAAATAAAA10.5319148936170213No Hit
CTCCATGGGGGGGTCTTTACCGCATCCCTTTTTTTTTACT10.5319148936170213No Hit
CTCCATGGGAACGTGCCCCACCCACAGTCAAAAAAAAAAA10.5319148936170213No Hit
CTCCATGGGGTCTGGTGTTCCCCCTGTTTCTCCTCGCCTC10.5319148936170213No Hit
CTCCATGGGGTCGACTTTTTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGTCTGGTTTTGGTTTTCTTTTATCGACAATT10.5319148936170213No Hit
CTCCATGGGGGCAAAAAAAACCAAAACAAAACACCCCCAC10.5319148936170213No Hit
CTCCATGGGGGAACAAAAAAAAAAAAAAAAAAAACAAAAA10.5319148936170213No Hit
CTCCATGGGAAGTGGCCCAGAGCCCCCTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGAATGCCAGGACAGGGAACCAGGAATGGGTG10.5319148936170213No Hit
CTCCATGGGACCATCCTTTTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGACGCCGTGGTCTCAACCCCGCGTCGCCTTT10.5319148936170213No Hit
CTCCATGGGACCTGAAGAACTCCCCAACCTTGAGCCCAGG10.5319148936170213No Hit
CTCCATGGGGTGTCCAGCCATTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGCCCTTCCCTCCCACCACCCCCCCCCCACCC10.5319148936170213No Hit
CTCCATGGGCCGTCCCCCCCCGCCCCCCCTTTTCTTCTCT10.5319148936170213No Hit
CTCCATGGGCAGCCCCCTTTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGAAGCAGTGGTATCACACAACAAACACCACC10.5319148936170213No Hit
CTCCATGGGACCGTTCACCCCACACCCGACCTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGCTCCCCATGGGGGAAAAAAAAAAAAAAACA10.5319148936170213No Hit
CTCCATGGGTGGTATCCCCCCAGTGTGCCTTAGGCCCTGC10.5319148936170213No Hit
CTCCATGGGGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGCGCAAAAACAAAAAAAAAAAAAAAAAAAAA10.5319148936170213No Hit
CTCCATGGGATCACCCGTCGATCTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGAGCGTGGTACAACCCAGAGCCGCTTTCTTTT10.5319148936170213No Hit
CTCCATGGGGCAGTGGTATCAAAAAAAAAAAAAACAAAAA10.5319148936170213No Hit
CTCCATGGGGCTCTCCATCGGATGACGTCGCCCGCGGAGC10.5319148936170213No Hit
CTCCATGGGGCGCCCCAACAAAAAAAAAAAAAAACAAAAA10.5319148936170213No Hit
CTCCATGGGAGCGTGGACCGTTTGGACTTCACTCCGCCGC10.5319148936170213No Hit
CTCCATGGGAGAGTCCCACGCCTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGTCCACAGTCCATTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGCTCAACTCAGAGTCCCGTCCTCCCCATGGAG10.5319148936170213No Hit
CTCCATGGACCTTTTTTCCTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGTGGACGCCGATCGACTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGTGGCCGCCGATCGACTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGGCCAAAAAAAAAAAAAAAAAAAAAAAACAA10.5319148936170213No Hit
CTCCATGTGGTGTTTGTGCCTCATCTATTACTGCAAAAAC10.5319148936170213No Hit
CTCCATGGGTCTCTCCATGGGACTGTATCAACGCAGAGTT10.5319148936170213No Hit
CTCCATGGGTTCAACAAAAACAAAAAACAAAAAAAAAAAA10.5319148936170213No Hit
CTCCATGGGAAGCTTCAACGCAGAGCCGATTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGCCCATTCCACCTACAACCATCTGCCCTCGG10.5319148936170213No Hit
CTCCATGGGGACGCAGTGCTCTGCTTGGGGACCCACACAC10.5319148936170213No Hit
CTCCATGGGGGGGTTGGGGATTTAGCTCAGTGGTAGNGCC10.5319148936170213No Hit
CTCCATGGGCCAAACAAAAACAAAAAAAAAAAAAAAAAAA10.5319148936170213No Hit
CTCCATGGACCCACAATCCTCTTCTCCCCCGGCCCATTTG10.5319148936170213No Hit
CTCCATGGGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.5319148936170213No Hit
CTCCATGGGAAGCAGTGGACCCAATGTTGATCTCACTCCC10.5319148936170213No Hit
CTCCATGGGACATGGTACACCCAAAAAAAAAAAAAAAAAA10.5319148936170213No Hit
CTCCATGGGGGAATTCCTTCGATCCCGTTTCCCTCCCCGT10.5319148936170213No Hit
CTCCATGGGATGGTATCACCCAGAGTCGCTCCTTTTTTTT10.5319148936170213No Hit
CTCCATCCGAACCAGCGCTCCCCACATCCACCCCCCCCCC10.5319148936170213No Hit
CTCCATGGGTGGTCAACCCAGAGTCGACTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGGGGCGCTTCGAGCCAACAACAAAGCACCGA10.5319148936170213No Hit
CTCCATGGGGTCTCGCAGAGTCCATCGGCCGACCCCGTAT10.5319148936170213No Hit
CTCCATGGGGAGTGCGTTCTCCTTTGTGTTCGTTTCTCTG10.5319148936170213No Hit
CTCCATGGGGACAACCCCCACCCAAACACAACCCACACCC10.5319148936170213No Hit
CTCCATGGGGGCATTCCTTCGCTTCTGTTTTCCTCCCCGC10.5319148936170213No Hit
CTCCATGGGGGGTGCGGGCATGGCGGAGGGTGAGTTCTCT10.5319148936170213No Hit
CTCCATGGGCCCGAGTATTTCCCCCCCCCTTTCCAGACCA10.5319148936170213No Hit
CTCCATGGGAAGAGTGGTATCAACCCAGAAAAAAAAAAAA10.5319148936170213No Hit
CTCCATGGGATTACGCAGAGTCGACTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGCACTTTCCCCCAGCCCACCTTTTTTTTTTCT10.5319148936170213No Hit
CTCCATGCCCGTTCACTACGGACTTATCCTCCCTGGTGCT10.5319148936170213No Hit
CTCCATGGGGTGGGTCGGACCCCCCCTTTCCGTAATCCCC10.5319148936170213No Hit
CTCCATGGGGGGGGCCTTCGTCTTCCGCCGCTCCCGGCGC10.5319148936170213No Hit
CTCCATGGGGTCTGGTTTTGGTTTTCTTTTATAGCCAATT10.5319148936170213No Hit
CTCCATGGGGCATTGGAAACAAAAAAAAACAAACAACCCA10.5319148936170213No Hit
CTCCATGGGGCTCGACCTTTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGCGTCCACTTTTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGACCAGTGCACCCAGAGCCGCCCCTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGGAAACCCAAACACACAACCACACACCCCAC10.5319148936170213No Hit
CTCCATGGGAGTGGTCAACCCAGATCGAACAAACACAACA10.5319148936170213No Hit
CTCCATGGGCTTCTTCCCCGCCCCCCCCTACGAGGTGGCT10.5319148936170213No Hit
CTCCATGGGGCCTTTTTTTTTTTTTTTTTTTTTTTTTCTT10.5319148936170213No Hit
CTCCATGGGAGAATCTGCTCCTCCCCCTGCCGGCCCTGAC10.5319148936170213No Hit
CTCCATGGGGCGTGCCGTCCTCTCCCTGGCCCTGGTTCAC10.5319148936170213No Hit
CTCCATGGGCCGAGCCCACCCCGCGTCCCTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGTATTGTATTTTACGCAGCATCCTATCACACATG10.5319148936170213No Hit
CTCCATCCCCCCCCTCCCCCCCCCGAGGTGATTTTGGTGT10.5319148936170213No Hit
CTCCATGGGAAGCAGTGGTATCAACCCAGCCTCGCCCTTT10.5319148936170213No Hit
CTCCATGGGAGATGGTACCACCCCGAGTCGCCTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGACCCTGAGCCACCCAGACCCGGCTTGCCCC10.5319148936170213No Hit
CTCCATGGGGTCGCCTTTTTTTTTTTTTTTTTTTTTTCCT10.5319148936170213No Hit
CTCCATGGGGGAGGTAATGTAAATAATGATTCCCTTAATG10.5319148936170213No Hit
CTCCATGGGGAGACAAAAAAAAAAACACAACACAAAAAAC10.5319148936170213No Hit
CTCCATGGGACCTGGTTCCACCCCGAGTCGCCTTTTTTTT10.5319148936170213No Hit
CTCCATCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCCTTT10.5319148936170213No Hit
CTCCATGGGCCGTGTCACGCAGAGTCGCCTTTTTTTCTTT10.5319148936170213No Hit
CTCCATGGGACCGGCCCAGCCGTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGAAAAAAAAAAAAAAACCCAAAAAAAAAAAAC10.5319148936170213No Hit
CTCCATGGGAGGCTGCCAGGACCCCCTACCCCCCACCTCA10.5319148936170213No Hit
CTCCATGGGTGGTCCACCCCGCGTCGCCTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGTGTACGCCGAGCCCTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGCTCTCCATGGGAACCGTGTACCCCCGAGTC10.5319148936170213No Hit
CTCCATGGGGTCAAAAAAACAAAAAAAAACAACAAAAACA10.5319148936170213No Hit
CTCCATGGGCCAACCCAGAGTCGTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGACAGTGGTATCACCGCAAACCAACCTTACTT10.5319148936170213No Hit
CTCCATGGGCCGATGTCACGAGACCGCCTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGCCTTCACTCTGTTGCTGAGGAGAGCGCTGG10.5319148936170213No Hit
CTCCATGGTGGCGCCCCCTTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGACGCCTGTATCAACCCAGAGCCGACTTTTTT10.5319148936170213No Hit
CTCCATGGGCTGGTAACCCCGAGCCCCCCTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGCTCACCCCGTCGACTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGAGCCCCCAAACACAAAAAAAAACCCCAACC10.5319148936170213No Hit
CTCCATGGGGTTTAGTAGAGGTACCCTTGTGAATAAGGCG10.5319148936170213No Hit
CTCCATGGGATCAGAGTCCATTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGTACGCAGCGCGTTTTTTNTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATTCTCCCCCCCACCCCCGCCCAGGTTCACTCCTTA10.5319148936170213No Hit
CTCCATGGGCCAACAAAAAAAAAAAAAACAAAAAAACACC10.5319148936170213No Hit
CTCCATGGGATGGTCTCACCCAAAAAAAAAAAAAAAAAAA10.5319148936170213No Hit
CTCCATGGGAAGCATGGTCTCAACCCAGAGCCTAAAAAAA10.5319148936170213No Hit
CTCCATGGGACAAAAACAAAAAAAAAAAAACACAAACAAC10.5319148936170213No Hit
CTCCATGGTGGTACAAACCAGAGTCGCCTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGTGGAGACCGCTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGTTGAGAGCAACCCCTGCGATTCGACCCTCC10.5319148936170213No Hit
CTCCATGGGGCACCCCTCGCTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGCGTCTCCTTTGGCCTTCTCCCGCCCTTCCCC10.5319148936170213No Hit
CTCCATGGGGCGTCGACTTTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGTGCCCATCGCCTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGATGGTTAACGCAGAGCCGCCTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTC10.5319148936170213No Hit
CTCCATGGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGGTCACGTGTTGTTTATATCTTTCGCTTTTT10.5319148936170213No Hit
CTCCATGGGGTATNTTTGGGGCCATTCACTGGGCACCGGA10.5319148936170213No Hit
CTCCATGGGATGGTCTCACGCAGAGCCGTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGACTTTTTTTTTTTTTTTTTTTTCCTTCCCCA10.5319148936170213No Hit
CTCCATGGGGAGTGCAGTGCTCCCCCTGGGACCCACTGCT10.5319148936170213No Hit
CTCCATGGGATTTCCGCTTTTGCCACCCTCCCTGTACTTT10.5319148936170213No Hit
CTCCATGGGGAGTGCCGTGGTCTCACCCCCGCGTCTTTTT10.5319148936170213No Hit
CTCCATGGGGAGCTTTTTTTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGCGGGTTGGCTGCCCCGTCCCCGCAACCAACCC10.5319148936170213No Hit
CTCCATGGGCACGAGAGTCGTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATCCCCCTCGTCCCCCCCCCCAAAAGGATGGCGTTT10.5319148936170213No Hit
CTCCATGGGCGCCAGACGATTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGCATTCAAAAACAAAAACAAAAAAAAAAAAA10.5319148936170213No Hit
CTCCATGGGTGGTAACTGTGAAAAAATCTGCTACTGTGGA10.5319148936170213No Hit
CTCCATGGGGGTGGAAATAAATTAACCCGCGTTCTTCCCC10.5319148936170213No Hit
CTCCATGGGGGAGAACACCAAAAAAAAAACAACCCAACCA10.5319148936170213No Hit
CTCCATGGGGCCATCTCATCCCCGCGTGCCCCCGCCTCCG10.5319148936170213No Hit
CTCCATGGGTCACGCCGATTTTTTTTTGGTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGAAGCAGTGTCAACCCAGNTTTTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGTCCCTGGTTGATCCCGCCCGTCGCATATGCT10.5319148936170213No Hit
CTCCATGGGTGGTTCCCCCCCCAGTCGATTCTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGACCATGTTCAACCCAGAGCCGCCCTTTTTTT10.5319148936170213No Hit
CTCCATGGGGTATCAACCCCGATCGGAAGACCTCGTATGC10.5319148936170213No Hit
CTCCATGGGATCTGTTAAAAAAAAAAAAAAAAAAAAAAAA10.5319148936170213No Hit
CTCCATGGGGCTCTCCATGGGCCCCCTCCTCCCCCCCTCT10.5319148936170213No Hit
CTCCATGGGACGCATGTACAACGCAGAGCCGCCTTTTTTT10.5319148936170213No Hit
CTCCATGGGCATGTCCCCACCCCGCACCGCCTCTTTTTTT10.5319148936170213No Hit
CTCCATCGGCCCGCATCGCCCCTCCCCCCACCCGCCCGCC10.5319148936170213No Hit
CTCCATGGGCAGTGCCCTCCATGGGGAAAAAAAAAAAAAA10.5319148936170213No Hit
CTCCATGGGACTGGTCAACCCACAGTCGCCTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGGTATCAACCCCGAGCCGCCCTTTTTTTTTT10.5319148936170213No Hit
CTCCATGGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTCC10.5319148936170213No Hit
CTCCATGGGACAGTGGTCCACCCCGCGCCGCCTTTTTTTT10.5319148936170213No Hit
CTCCATGGGGAGGAAAACCAAACACAAACAAAAAAAAAAA10.5319148936170213No Hit
CTCCATGGGGCGTAAAAAAAAAAAAAAAAAAAACAAAAAA10.5319148936170213No Hit
CTCCATGGGTGGCCCCTTTTTTTTTTTTTTTTTTTTTTTT10.5319148936170213No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCATG150.034.01
CCATGGG150.034.03
TCCATGG150.034.02