SRR1525902_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1525902_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14841
Sequences flagged as poor quality	0
Sequence length	56
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CCAGACGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCT	732	4.9322821912270065	No Hit
CCAGACGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	635	4.278687419985176	No Hit
CCAGACGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGCATTGAACAAAAACTC	233	1.5699750690654268	No Hit
CCAGACGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTCCAATCCGCCCAATCT	176	1.185903914830537	No Hit
CCAGACGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAAAAA	130	0.8759517552725558	No Hit
CCAGACGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCTC	111	0.7479280371942592	No Hit
CCAGACGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCCGATTGAACAAAAACTC	87	0.586213866990095	No Hit
CCAGACGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGACCAAAAACTC	58	0.39080924466006334	No Hit
CCAGACGGGGCTCCAGACGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAA	57	0.3840711542348898	No Hit
CCAGACGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGCTCAATCCGCCCAATCT	55	0.3705949733845428	No Hit
CCAGACGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	55	0.3705949733845428	No Hit
CCAGACGGGGCTCCAGACGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATT	48	0.32342834040832824	No Hit
CCAGACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	47	0.31669024998315476	No Hit
CCAGACGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	43	0.2897378882824608	No Hit
CCAGACGGGTCACAGATCCTCTCCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	39	0.26278552658176674	No Hit
CCAGACGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGAACAAAAACTCA	38	0.2560474361565932	No Hit
CCAGACGGGTCACAGATCCTCTGAAGGAGATTGGGCGGATTGAACAAAAACTCATC	35	0.2358331648810727	No Hit
CCAGACGGGCTCCAGACGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTG	31	0.2088808031803787	No Hit
CCAGACGGGTCCCCCCTCCTCTTCTGAGATGAGTTTTTGTTCCCTCCGCCCAATCT	31	0.2088808031803787	No Hit
CCAGACGGGGCTCCAGACGGGTCACAGATCCTCTTCTGAGCTGAGTTTTTGTTCAA	29	0.19540462233003167	No Hit
CCAGACGGGCATCAGCGTAAACCGGGCTTCTCCTCCCAAAAAAAAAAAAAAAAAAA	29	0.19540462233003167	No Hit
CCAGACGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGCTTGAACAAAAACTCA	29	0.19540462233003167	No Hit
CCAGACGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTCCAATCCGCCCAAAAA	28	0.18866653190485816	No Hit
CCAGACGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTCTAATCCGCCCAATCT	25	0.16845226062933766	No Hit
CCAGACGGGGGGAATTCCTTCGATTCTGTTTTGCTACCCGTTGTAGCGCCGGAAGA	23	0.15497607977899064	No Hit
CCAGACGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTCTTTTTTTTTTTTTTT	23	0.15497607977899064	No Hit
CCAGACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAA	22	0.14823798935381713	No Hit
CCAGACGGGGCTCCAGACGGGTCACAGATCCTCTTCTGAACGAGATTGGGCGGATT	19	0.1280237180782966	No Hit
CCAGACGGGCATCAGCGTAAACCGGGCTTCTCCTCCCAAACAAAAAAAAAAAAAAA	19	0.1280237180782966	No Hit
CCAGACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	18	0.1212856276531231	No Hit
CCAGACGGGCTCCAGACGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAAT	18	0.1212856276531231	No Hit
CCAGACGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGAACAAAAAACT	18	0.1212856276531231	No Hit
CCAGACGGCTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCT	18	0.1212856276531231	No Hit
CCAGACGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCTGAAGGAGAT	17	0.11454753722794961	No Hit
CCAGACGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGCTCCATCCGCCCAATCT	17	0.11454753722794961	No Hit
CCAGACGGGTCCCCGCTCCTCTTCTGAAGGAGATTGGGCGGACTGCCCAAAAACTC	16	0.1078094468027761	No Hit
CCAGACGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGAACAAAAACTA	15	0.1010713563776026	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCAATCC	30	9.092091E-7	50.52921	41
GTTCCCT	15	0.007928791	50.52921	39
GTTCCAT	15	0.007928791	50.52921	39
TGTTCCC	15	0.007928791	50.52921	38
TGTTCCA	15	0.007928791	50.52921	38
TTCCCTC	15	0.007928791	50.52921	40
AACCAAC	15	0.007928791	50.52921	41
TTCCATC	15	0.007928791	50.52921	40
TCCATCC	15	0.007928791	50.52921	41
TCACTCC	15	0.007928791	50.52921	41
GCCGATT	25	1.8666977E-5	50.52921	38
CCGATTG	25	1.8666977E-5	50.52921	39
TCCCTCC	15	0.007928791	50.52921	41
CGATTGA	30	9.092091E-7	50.52921	40
TTTTGAT	20	3.909241E-4	50.356167	35
TTGTTCC	35	4.561298E-8	50.356167	37
CCAACAC	20	3.909241E-4	50.356167	43
TTCGCCC	15	0.008037604	50.356167	45
AATTCGC	15	0.008037604	50.356167	43
CATCCGC	15	0.008037604	50.356167	43

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content