SRR1525898_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1525898_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	138276
Sequences flagged as poor quality	0
Sequence length	56
%GC	56

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAGGAGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	2628	1.9005467326217131	No Hit
GAGGAGGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCT	737	0.532991987040412	No Hit
GAGGAGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTCGTCTCAAAGATTAAG	703	0.5084034828892939	No Hit
GAGGAGGGGCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAC	668	0.4830917874396135	No Hit
GAGGAGGGGGGGCGCTGACCCCCCTTCCCGGGGGGGGATGCGTGCATTTATCAGAT	651	0.47079753536405455	No Hit
GAGGAGGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	564	0.4078798923891348	No Hit
GAGGAGGGGGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTC	359	0.2596256761838642	No Hit
GAGGAGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCCTGTCTCAAAGATTAAG	340	0.24588504151118054	No Hit
GAGGAGGGGGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAA	294	0.21261824177731492	No Hit
GAGGAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	286	0.2068327113888166	No Hit
GAGGAGGGGAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCC	276	0.19960079840319359	No Hit
GAGGAGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCCAAGATTAAG	272	0.19670803320894445	No Hit
GAGGAGGGGAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTC	250	0.18079782464057392	No Hit
GAGGAGGGGGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGC	241	0.17428910295351327	No Hit
GAGGAGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	234	0.1692267638635772	No Hit
GAGGAGGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCC	222	0.16054846828082964	No Hit
GAGGAGGGGGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGT	214	0.15476293789233128	No Hit
GAGGAGGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCCACGATTAAG	204	0.14753102490670833	No Hit
GAGGAGGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGCATTGAACAAAAACTC	203	0.14680783360814603	No Hit
GAGGAGGGGGGGCCGATCGCACGCCCCCCGTGGCGGCGACCACCCATTCGAACGTC	183	0.1323440076369001	No Hit
GAGGAGGGGCTCCTACTTGGATAACTGTGGTAATTCTAGACCTAATACATGCCGAC	183	0.1323440076369001	No Hit
GAGGAGGGGGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGT	180	0.1301744337412132	No Hit
GAGGAGGGGGGTGAGCTCCCTCCCGGCTCCGGCCGGGGGTCGGGCGCCGGCGGCTT	176	0.12728166854696404	No Hit
GAGGAGGGGCTCCTACTTGGATAACTGTGGTAATTCTAGCGCTAATACATGCCGAC	172	0.12438890335271487	No Hit
GAGGAGGGGGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCAT	162	0.1171569903670919	No Hit
GAGGAGGGGGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAG	158	0.11426422517284274	No Hit
GAGGAGGGGATCAAAACCAACCCGGTGAGCTCCCTCCCGGCTCCGGCCGGGGGTCG	152	0.10992507738146894	No Hit
GAGGAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	150	0.10847869478434437	No Hit
GAGGAGGGGCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCG	150	0.10847869478434437	No Hit
GAGGAGGGGGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAA	146	0.10558592959009516	No Hit
GAGGAGGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTCCAATCCGCCCAATCT	145	0.10486273829153286	No Hit
GAGGAGGGGGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATG	145	0.10486273829153286	No Hit
GAGGAGGGGAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTG	142	0.102693164395846	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACAAA	15	0.008007722	50.631638	38
ATCCGTG	20	3.920252E-4	50.631638	38
CCTTCGG	15	0.008042812	50.57569	37
TTGTTTA	15	0.008042812	50.57569	37
GACGACA	15	0.008125134	50.44563	36
ACGGGGC	15	0.008136945	50.427105	35
AAGAGAC	35	4.9036316E-8	50.4271	35
ATATGCC	110	0.0	50.33468	34
TCCACGA	25	2.0191024E-5	50.242588	45
CAACGAT	15	0.008267713	50.224216	46
ACGGCAA	15	0.008267713	50.224216	46
ATTATCT	20	4.0798058E-4	50.224216	46
AACGATT	15	0.008303646	50.169167	47
CACGATT	25	2.036661E-5	50.169163	47
ACATATC	15	0.008387943	50.04118	12
GATTACG	15	0.008424264	49.98653	50
GCAAAAC	20	4.1915194E-4	49.950165	9
GGAGTCG	25	2.0900969E-5	49.950165	9
GGCCTAC	20	4.1915194E-4	49.950165	9
GGTAGAG	65	0.0	49.877586	32

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content