SRR1525890_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1525890_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28902
Sequences flagged as poor quality	0
Sequence length	56
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AACCTAGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCT	714	2.470417272161096	No Hit
AACCTAGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	514	1.7784236385025256	No Hit
AACCTAGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGCATTGAACAAAAACTC	183	0.6331741747975919	No Hit
AACCTAGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAAAAA	145	0.5016953844024635	No Hit
AACCTAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	132	0.4567157982146564	No Hit
AACCTAGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTCCAATCCGCCCAATCT	118	0.4082762438585565	No Hit
AACCTAGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGCTCAATCCGCCCAATCT	60	0.2075980900975711	No Hit
AACCTAGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCCGATTGAACAAAAACTC	48	0.1660784720780569	No Hit
AACCTAGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGACCAAAAACTC	45	0.15569856757317835	No Hit
AACCTAGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTCCAATCCGCCCAAAAA	32	0.11071898138537124	No Hit
AACCTAGGGTCACAGATCCTCTGAAGGAGATTGGGCGGATTGAACAAAAACTCATC	31	0.10725901321707841	No Hit
AACCTAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTCGTCTCAAAGATTAAG	31	0.10725901321707841	No Hit
AACCTAGGGTCACAGATCCTCTCCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	29	0.10033907688049269	No Hit
AACCTAGGGAAGCAGTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTT	29	0.10033907688049269	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCAATCC	20	3.8576685E-4	50.65785	41
GATTGAC	20	3.8576685E-4	50.65785	41
CATTGAA	35	4.5542038E-8	50.657845	41
TTGTCCA	20	3.8914778E-4	50.568665	37
TGTCCAA	20	3.8914778E-4	50.568665	38
CACCCGA	20	3.8914778E-4	50.568665	40
TCCAATC	20	3.8914778E-4	50.568665	40
CGCATTG	35	4.6182322E-8	50.568665	39
GCATTGA	35	4.6182322E-8	50.568665	40
CGGATCC	15	0.008264332	50.1274	13
TCTCGGC	15	0.008264332	50.1274	15
TTCTCGG	15	0.008264332	50.1274	14
CCATCCT	15	0.008264332	50.1274	14
TCCCATG	15	0.008321633	50.04007	48
CCATGCT	15	0.008321633	50.04007	50
ACTCCGC	15	0.008321633	50.04007	43
CACTCCG	15	0.008321633	50.04007	42
AGTCCCG	15	0.008321633	50.04007	11
ACGGATC	15	0.008321633	50.04007	12
CTCCGCC	15	0.008321633	50.04007	44