SRR1525878_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1525878_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	27712
Sequences flagged as poor quality	0
Sequence length	56
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTGGCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	175	0.6314953810623557	No Hit
CGTGGCGGGCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAC	92	0.331986143187067	No Hit
CGTGGCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	72	0.25981524249422633	No Hit
CGTGGCGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCT	59	0.2129041570438799	No Hit
CGTGGCGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATAT	49	0.17681870669745958	No Hit
CGTGGCGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	37	0.1335161662817552	No Hit
CGTGGCGGGGCCCACTGTGAAACCACTGGGTTCTGGGTCCCAGTGGCTGAATCAGG	37	0.1335161662817552	No Hit
CGTGGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTATCTCATC	35	0.12629907621247113	No Hit
CGTGGCGGGCTCCTACTTGGATAACTGTGGTAATTCTAGACCTAATACATGCCGAC	35	0.12629907621247113	No Hit
CGTGGCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCCCCCGACTGCTCTTCC	35	0.12629907621247113	No Hit
CGTGGCGGGGGGCGCTGACCCCCCTTCCCGGGGGGGGATGCGTGCATTTATCAGAT	31	0.11186489607390301	No Hit
CGTGGCGGGGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAA	28	0.10103926096997691	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCCGAC	15	0.008095952	50.383213	41
TATCATT	15	0.008095952	50.383213	38
TATGCTT	30	9.709238E-7	50.29144	35
AAGAGCC	20	3.9961154E-4	50.29144	35
ATATCAT	15	0.008154664	50.29144	37
ATATGCT	40	2.4338078E-9	50.200005	34
TATACTA	20	4.0687266E-4	50.108894	44
TTATACT	20	4.0687266E-4	50.108894	43
ATTATAC	20	4.0687266E-4	50.108894	42
CACAATT	15	0.008273039	50.10889	42
CAATTAT	15	0.008273039	50.10889	44
ATCCTAG	20	4.105423E-4	50.018116	14
TGGTTGA	40	2.5138434E-9	50.018116	14
TCCTAGC	20	4.105423E-4	50.018116	15
AATTATC	20	4.105423E-4	50.018116	45
TATCTCA	15	0.008332702	50.018116	48
TATTATA	20	4.105423E-4	50.018116	49
ACTATTA	20	4.105423E-4	50.018116	47
ACTAATC	20	4.142382E-4	49.92767	10
CATGATT	15	0.008392687	49.92767	32