SRR1525806_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1525806_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	72353
Sequences flagged as poor quality	0
Sequence length	56
%GC	59

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GCCCTCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAG	482	0.6661783201802275	No Hit
GCCCTCGGGCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAC	253	0.349674512459746	No Hit
GCCCTCGGGGGGCGCTGACCCCCCTTCCCGGGGGGGGATGCGTGCATTTATCAGAT	238	0.3289428219977057	No Hit
GCCCTCGGGTCACAGATCCTCTTCTGAGATGAGTTTTTGTTCAATCCGCCCAATCT	215	0.2971542299559106	No Hit
GCCCTCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCC	201	0.27780465219133965	No Hit
GCCCTCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC	190	0.26260141251917685	No Hit
GCCCTCGGGGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTC	171	0.23634127126725912	No Hit
GCCCTCGGGTCACAGATCCTCTTCTGAAGGAGATTGGGCGGATTGAACAAAAACTC	141	0.19487789034317857	No Hit
GCCCTCGGGCGTCCCTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAA	131	0.18105676336848506	No Hit
GCCCTCGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTCGTCTCAAAGATTAAG	118	0.1630892983013835	No Hit
GCCCTCGGGAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCC	117	0.16170718560391414	No Hit
GCCCTCGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCC	115	0.15894296020897544	No Hit
GCCCTCGGGGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGT	109	0.15065028402415934	No Hit
GCCCTCGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGC	105	0.14512183323428193	No Hit
GCCCTCGGGGGGCCGATCGCACGCCCCCCGTGGCGGCGACCACCCATTCGAACGTC	104	0.14373972053681258	No Hit
GCCCTCGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTT	91	0.125772255469711	No Hit
GCCCTCGGGGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGC	91	0.125772255469711	No Hit
GCCCTCGGGGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAA	91	0.125772255469711	No Hit
GCCCTCGGGAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTC	89	0.12300803007477229	No Hit
GCCCTCGGGGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCC	85	0.1174795792848949	No Hit
GCCCTCGGGGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAA	84	0.11609746658742554	No Hit
GCCCTCGGGGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATG	79	0.10918690310007878	No Hit
GCCCTCGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATAT	73	0.10089422691526267	No Hit
GCCCTCGGGGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGT	73	0.10089422691526267	No Hit
GCCCTCGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCG	73	0.10089422691526267	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACCC	15	0.008179981	50.3352	39
ACCGCTA	15	0.008179981	50.3352	39
ACCGCGA	15	0.008179981	50.3352	39
CACGATT	15	0.008179981	50.3352	47
TCGGACT	15	0.008179981	50.3352	47
CACTATC	15	0.008179981	50.3352	47
AGCGCGA	15	0.008179981	50.3352	47
TCCACGA	15	0.008179981	50.3352	45
ACTCGAA	15	0.008179981	50.3352	46
CCACGAT	15	0.008179981	50.3352	46
ACCTAAT	25	1.9875664E-5	50.335197	40
CGGACAG	15	0.008248138	50.22975	37
CGTCTCG	15	0.008248138	50.22975	42
ATTATAC	15	0.008248138	50.22975	42
TAGACCT	25	2.0124193E-5	50.229748	37
AAACCGC	20	4.0644742E-4	50.229748	37
CTAGACC	30	1.006707E-6	50.1947	36
GGTAAGC	15	0.00827095	50.1947	34
GAGCGTC	15	0.00827095	50.1947	34
CCGAAAA	50	7.2759576E-12	50.1947	36

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content