Basic Statistics
Measure | Value |
---|---|
Filename | SRR1926875_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 640254 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCCTACAGTGGACATTTCTAAATT | 781 | 0.12198283806114447 | No Hit |
GTATCAACGCAGAGTACTTTTTTTT | 722 | 0.11276774530108365 | No Hit |
GATATACACTGTTCTACAAATCCCG | 657 | 0.10261552446372846 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACTGTT | 65 | 5.3624317E-5 | 13.174684 | 7 |
GTATTGG | 70 | 1.050421E-4 | 12.261506 | 1 |
GCTATAG | 55 | 0.0029777107 | 12.137652 | 1 |
CTAAGCA | 55 | 0.0030111747 | 12.119562 | 4 |
GTCTATG | 80 | 2.7493877E-5 | 11.920909 | 1 |
GTATTAA | 75 | 1.997267E-4 | 11.444073 | 1 |
GTCCAAG | 75 | 1.997267E-4 | 11.444073 | 1 |
TCAATAC | 75 | 2.0104284E-4 | 11.4359865 | 3 |
GGACCTG | 250 | 0.0 | 11.418059 | 6 |
GGGTATA | 60 | 0.0057030134 | 11.126182 | 1 |
ATCTTAG | 60 | 0.0057030134 | 11.126182 | 1 |
AATACTC | 60 | 0.0058004777 | 11.100891 | 5 |
GTGTAGC | 200 | 0.0 | 10.967236 | 1 |
GTAGGAC | 420 | 0.0 | 10.891416 | 3 |
CCAAAAC | 70 | 0.0014506585 | 10.891416 | 3 |
GAAGTGT | 105 | 3.3902597E-6 | 10.874342 | 6 |
TGGATAG | 70 | 0.0014697778 | 10.874342 | 5 |
CTAGACT | 115 | 8.5199827E-7 | 10.76458 | 4 |
GGATAGG | 80 | 3.6322259E-4 | 10.728818 | 1 |
TGTAGAA | 240 | 0.0 | 10.721238 | 2 |