SRR1926871_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1926871_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	542132
Sequences flagged as poor quality	0
Sequence length	25
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTAGGACGTGGAATATGGCAAGA	1881	0.3469634701511809	No Hit
GTCCTACAGTGGACATTTCTAAATT	1836	0.33866290866431054	No Hit
CTTTAGGACGTGAAATATGGCGAGG	1738	0.32058613031512617	No Hit
GTCCTAAAGTGTGTATTTCTCATTT	1630	0.3006647827466373	No Hit
GTATCAACGCAGAGTACTTTTTTTT	1317	0.24292976618240578	No Hit
GTCCTACAGTGTGCATTTCTCATTT	1105	0.20382489873314985	No Hit
CTGAAGGACCTGGAATATGGCGAGA	936	0.1726516789269034	No Hit
CTGTAGGACCTGGAATATGGCGAGA	929	0.17136048047339025	No Hit
GGTATCAACGCAGAGTACTTTTTTT	892	0.1645355743619635	No Hit
GTACATGGGAAGCAGTGGTATCAAC	841	0.15512827134351043	No Hit
TATCAACGCAGAGTACTTTTTTTTT	764	0.1409250883548656	No Hit
CCCATGTACTCTGCGTTGATACCAC	718	0.1324400699460648	No Hit
GATATACACTGTTCTACAAATCCCG	636	0.1173146023477677	No Hit
GTCCTTCAGTGTGCATTTCTCATTT	556	0.10255804859333152	No Hit
GAATATGGCAAGAAAACTGAAAATC	556	0.10255804859333152	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGCGCG	25	0.006064945	18.979431	9
TTAAGCC	35	0.002138145	16.31926	3
CATAGGG	50	8.771081E-5	15.184945	7
TCCAACG	100	4.1836756E-11	15.183545	18
GGTCTAC	45	6.59656E-4	14.823305	1
GTATAAC	80	1.2357486E-7	14.293901	1
CCTACAC	80	1.2512464E-7	14.279354	3
TAAAGGT	85	2.6244743E-7	13.4381485	4
CCCCTAT	50	0.0014630269	13.340974	1
CTTAAAC	50	0.0014743012	13.327396	3
GCTGGAC	50	0.0014743012	13.327396	3
TCTAGAC	50	0.0014743012	13.327396	3
TTATACT	50	0.0014753299	13.326164	4
CCAACGA	80	2.016939E-6	13.04836	19
GACTGGG	60	4.118674E-4	12.654122	7
GGCGAGG	360	0.0	12.389352	19
TAAGACA	100	1.3993667E-7	12.374295	4
CTAGGAC	85	3.8405087E-6	12.319443	3
TATACTG	85	3.844485E-6	12.318303	5
CTAAGAC	80	2.7986991E-5	11.899462	3