FastQCFastQC Report
Thu 26 May 2016
SRR1926847_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1926847_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1240
Sequences flagged as poor quality0
Sequence length25
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTT90.7258064516129032No Hit
GTATCAACGCAGAGTACTTTTTTTT70.564516129032258No Hit
CACACACACACACACACACACACAC30.24193548387096775No Hit
CTTATACACATCTCCGAGCCCACGA30.24193548387096775No Hit
TGTAAGAACTCCGCCTCCTGTGTTC20.16129032258064516No Hit
TCTGTTTGTTTGCTTTTGGTTTTTG20.16129032258064516No Hit
GGCCCATACTGTTACGTCAAGCTTC20.16129032258064516No Hit
TCAACGCAGAGTACTTTTTTTTTTT20.16129032258064516No Hit
GACTAAACGTGTGTATGCCCAAATT20.16129032258064516No Hit
GTTAGAGGCAGTGTGGCATAGGTAC20.16129032258064516No Hit
TATCAACGCAGAGTACTTTTTTTTT20.16129032258064516No Hit
GGGTAAAGAAAAAGCATGCAGGTCA20.16129032258064516No Hit
GGCTAAGTGTTCGAAAATACTAGGC20.16129032258064516No Hit
CTTTTATATAGCGAAGAACCAAACA20.16129032258064516No Hit
TATGAACGCAGAGTACTTTTTTTTT20.16129032258064516No Hit
GGCCCTTTTCATGCTATAGAAGAAT20.16129032258064516No Hit
CTCACGGATCCATCTCCAAACCTTC20.16129032258064516No Hit
TAGTAAATCGGAGTCCCGATGGGTG20.16129032258064516No Hit
AGTTTGATCCCCAGGACCCATGTTG20.16129032258064516No Hit
GTATATAAATAACAATTTAAGGCTC20.16129032258064516No Hit
CATTGTGCCTCTTGAATCTGTAGAT20.16129032258064516No Hit
TTCCACCACACAAATTAAATATGTT20.16129032258064516No Hit
CTTTAGAACACTGATAAACAGATAG20.16129032258064516No Hit
GTATTACAACTATCCCTAAACAGAA20.16129032258064516No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)