FastQCFastQC Report
Thu 26 May 2016
SRR1926811_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1926811_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42519
Sequences flagged as poor quality0
Sequence length25
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAA1340.31515322561678305No Hit
GTATCAACGCAGAGTACTTTTTTTT1140.2681154307486065No Hit
GGTATCAACGCAGAGTACTTTTTTT1060.24930031280133588No Hit
TATCAACGCAGAGTACTTTTTTTTT440.10348314870998847No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)