FastQCFastQC Report
Thu 26 May 2016
SRR1926811_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1926811_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42519
Sequences flagged as poor quality0
Sequence length25
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTT2250.5291751922669865No Hit
GGTATCAACGCAGAGTACTTTTTTT1750.41158070509654504No Hit
TATCAACGCAGAGTACTTTTTTTTT1310.3080975563865566No Hit
ACGCAGAGTACTTTTTTTTTTTTTT960.22578141536724758No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA400.004925140614.3533261
Produced by FastQC (version 0.11.5)