FastQCFastQC Report
Thu 26 May 2016
SRR1926801_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1926801_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences945087
Sequences flagged as poor quality0
Sequence length25
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTACAGTGGACATTTCTAAATT24520.2594470138727969No Hit
CTGTAGGACGTGGAATATGGCAAGA23580.2495008396052427No Hit
GTCCTAAAGTGTGTATTTCTCATTT17520.1853797586888826No Hit
GTATCAACGCAGAGTACTTTTTTTT17310.18315774103336518No Hit
CTTTAGGACGTGAAATATGGCGAGG17110.1810415337423962No Hit
GTCCTACAGTGTGCATTTCTCATTT16190.1713069802039389No Hit
CTGTAGGACCTGGAATATGGCGAGA12820.1356488873511116No Hit
GTACATGGGAAGCAGTGGTATCAAC10180.10771495111032106No Hit
GGTATCAACGCAGAGTACTTTTTTT9820.1039057779865769No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGACC5900.014.52384
CCAACGA1006.693881E-1014.23337319
AGGACCT9000.013.0122485
GGCGAGG4750.012.58529919
TCCAACG1457.2759576E-1212.4337518
CTGTAGG13000.012.3900031
TGTAGGA13350.012.3507382
GGACCTG8800.012.3342276
GTCGAGG550.003093848712.07680119
GTCTTAG1302.4792826E-911.7301811
AGGACGT10500.011.6974235
GTAGGAC13450.011.6820913
ACTGTTC3250.011.6780468
GACCTGG9100.011.4701187
GGACGTG10300.011.4623636
GTCCTAC12550.011.3154181
TAGGACG11150.011.2716844
ATAATAC1104.809117E-711.254073
TGGCGAG12950.011.137567518
AGTATAC600.005769451611.1097873